SNP Profiles of SIAL 88   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
12._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
13._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
14._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
15._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
16._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
17._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
18._GC-01-052-3-07
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._GC-01-52-3-7
AAAA__AAGGGG__GGGG__GGAAGGAG
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGTTAACCGG
1._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
2._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
3._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
4._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
5._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
6._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
7._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
8._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
9._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
10._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
11._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
12._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
13._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
14._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
15._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
16._NA
__CCAAGGCCGGTTAATTGGTTAACCGG
17._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
18._GC-01-052-3-07
AACCAGGGCCCCTTAATTGGTTAACCGG
19._GC-01-52-3-7
TTCCAACC__GGAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAACGCCGGTTGGTTAGTTAACC
1._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
2._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
3._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
4._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
5._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
6._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
7._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
8._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
9._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
10._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
11._NA
AATTGGAACCCCGGTTGGTTAATTAACC
12._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
13._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
14._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
15._NA
AATTGGAACCCCGGTTGGTTAATTAACC
16._NA
AATTGGAACCCCGGTTGGTTAATTAACC
17._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
18._GC-01-052-3-07
AATTGTGGGGCCAAGGGGTTAACCAGCC
19._GC-01-52-3-7
AAAACCAACCCCGGAACCAAAAAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGGTTTCCTT
1._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
2._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
3._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
4._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
5._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
6._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
7._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
9._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
10._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGG__TTCCTT
11._NA
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._NA
GGTTCCAAGGAACC__GGGGTTTTCCTT
16._NA
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTT__TT
18._GC-01-052-3-07
GGTTTTAAGGAACCCCGGAAGGTTCCCC
19._GC-01-52-3-7
CC__GG__GGAAGG__GGGGAAAAGGAA
 5758596061626364656667686970
_Input profile
TTAACCTTCCAAGGGGACTTGGGGTTCC
1._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
2._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
3._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
4._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
5._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
6._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
7._GC-01-052-3-07
TTAACCTTCCAAGGGGACTTGGGGTTCC
8._NA
TTAACCTTCCAAGGGG__TTGGGGTTCC
9._NA
TTAACCTTCCAAGGGGACTTGGGGTTCC
10._GC-01-052-3-07
TTAACCTTCCAAGGGGACTTGGGGTTCC
11._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
12._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
13._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
14._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
15._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
16._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
17._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
18._GC-01-052-3-07
TTGGCCTTCCAAGGGG__TTGGGGTTCC
19._GC-01-52-3-7
AAAAGGAAGGAAGGGGAAAACCGG____
 7172737475767778798081828384
_Input profile
GGTTACAACCAAAACCGGCCTTAATTTT
1._NA
GGTTACAACCAAAACCGGCCTTAATTTT
2._NA
GGTTACAACCAAAACCGGCCTTAATTTT
3._NA
GGTTACAACCAAAACCGGCCTTAATTTT
4._NA
GGTTACAACCAAAACCGGCCTTAATTTT
5._NA
GGTTACAACCAAAACCGGCCTTAATTTT
6._NA
GGTTACAACCAAAACCGGCCTTAATTTT
7._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
8._NA
GGTTACAACCAAAACCGGCCTTAATTTT
9._NA
GGTTACAACCAAAACCGGCCTTAATTTT
10._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
11._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
12._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
13._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
14._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
15._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
16._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
17._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
18._GC-01-052-3-07
GGTTACAGACCCAGACGGCCATCCTTCT
19._GC-01-52-3-7
__AACCAACCAA__CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
6._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
8._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
9._NA
CTTTAACTCC__TTAAGGX_XX_XX_XX_XX_X
10._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
15._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
16._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
17._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-01-052-3-07
CCCTAGCCCCTTTTATGGX_XX_XX_XX_XX_X
19._GC-01-52-3-7
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: SIAL_88 GC-01-052-3-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

1._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._SIAL_88 NA

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._SIAL_88 NA

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._SIAL_88 GC-01-052-3-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

11._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SIAL_88 NA

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._SIAL_88 NA

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

76.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240