SNP Profiles of JA 9 /37 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._GU_207___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._GU_207___
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
2._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
3._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
4._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
5._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
6._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
7._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
8._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
9._GU_207___
AACCAAGGCCGGTTAATTGGTTAACCGG
10._GU_207___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
2._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
3._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
4._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
5._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
6._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
7._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
8._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
9._GU_207___
AATTGGGGCCCCGGTTGGTTAATTAACC
10._GU_207___
AAAACCGGCCCCGGAA__AAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
5._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
7._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
8._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
9._GU_207___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
10._GU_207___
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGCCAATTGGGGTT
1._GU_207___
TTAACCTTCCAAGGGGCCAATTGGGGTT
2._GU_207___
TTAACCTTCCAAGGGGCCAATTGGGGTT
3._GU_207___
TTAACCTTCCAAGGGGCCAATTGGGGTT
4._GU_207___
TTAACCTTCCAAGGGGCCAATTGGGGTT
5._GU_207___
TTAACCTTCCAAGGGGCCAATTGGGGTT
6._GU_207___
TTAACCTTCCAAGGGGCCAATTGGGGTT
7._GU_207___
TTAACCTTCC__GGGGCCAATTGGGGTT
8._GU_207___
TT__CCTTCCAAGGGGCCAATTGGGGTT
9._GU_207___
TTAACCTTCCAAGGGG__AATTGGGGTT
10._GU_207___
AAAAGGAAGGAAGGGGCCAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTCCAACCAAAACCGGCCTTAATT
1._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
2._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
3._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
4._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
5._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
6._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
7._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
8._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
9._GU_207___
CCGGTTCCAACCAAAACCGGCCTTAATT
10._GU_207___
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
8._GU_207___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
9._GU_207___
TTTTTTAATTCCTT__AAGGX_XX_XX_XX_X
10._GU_207___
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: GU_207 GC-01-056-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

1._GU_207 GC-01-056-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._GU_207 GC-01-056-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._GU_207 GC-01-056-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

4._GU_207 GC-01-056-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._GU_207 GC-01-056-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._GU_207 GC-01-056-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._GU_207 GC-01-056-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_207 GC-01-056-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_207 GC-01-056-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._GU_207 GC-01-56-3-11

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240