SNP Profiles of EET-399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGGGCTCCCCCTGGCTCTTT
1._EET_400_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
2._EET_400_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
3._EET_400_[ECU]___
AAAACTAC________CCCTGG__CT__
4._EET_400_[ECU]___
AAAACTAC________CCCTGG__CT__
5._EET_400_[ECU]___
AAAACTAC________CCCTGG__CT__
6._EET_400_[ECU]___
AAACCTAC________CCCTGG__CT__
7._EET_400_[ECU]___
AAACCTAC________CCCTGG__CT__
8._EET_400_[ECU]___
__ACCTAC________CCCTGG__CT__
9._EET_400_[ECU]___
____CTAC____TT__CC____CTTT__
10._EET_400_[ECU]___
AA__CCAAGGGGCCCCCCCCGGTTTTTT
11._EET_400_[ECU]___
AA__CCAAGGGGCCCCCCCCGGTTTTTT
12._EET_400_[ECU]___
AA__CCAAGGGGCCCCCCCCGGTTTTTT
13._EET_400_[ECU]___
AA__CCAAGGGGCCCCCCCCGGTTTTTT
14._EET_400_[ECU]___
AA__CCAAGGGGCCCCCCCCGGTTTTTT
15._EET_400_[ECU]___
AACCCCCC________CCCCGG__CC__
16._EET_400_[ECU]___
AA__CCAA________CCCCGG__TT__
17._EET_400_[ECU]___
AA__CCAA________CCCCGG__TT__
18._EET_400_[ECU]___
AA__CCAA________CCCCGG__TT__
19._EET_400_[ECU]___
AA__CCAA________CCCCGG__TT__
20._EET_400_[ECU]___
AA__CCAA________CCCCGG__TT__
21._EET_400_[ECU]___
AAAA__ACAAAG__GGGG__AGAGAGAA
22._EET_400_[ECU]___
AACC__ACAGAG__AGGG__AGAGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAGGCGCGCGCCAATTAGATAACGCG
1._EET_400_[ECU]___
ATAAGGCGCGCGCCAATTAGATAACGCG
2._EET_400_[ECU]___
ATAAGGCGCGCGCCAATTAGATAACGCG
3._EET_400_[ECU]___
____GG____CG________ATAA__CG
4._EET_400_[ECU]___
____GG____CG________ATAA__CG
5._EET_400_[ECU]___
____GG____CG________ATAA__CG
6._EET_400_[ECU]___
____GG____CG________ATAA__CG
7._EET_400_[ECU]___
____GG____CG________ATAA__CG
8._EET_400_[ECU]___
____GG____CG________ATAA__CG
9._EET_400_[ECU]___
________CC____________AACCCG
10._EET_400_[ECU]___
AAAAGGGGCCGGTTAATTGGTTAACCCG
11._EET_400_[ECU]___
AAAAGGGGCCGGTTAATTGGTTAACCCG
12._EET_400_[ECU]___
AAAAGGGGCCGGTTAATTGGTTAACCCG
13._EET_400_[ECU]___
AAAAGGGGCCGGTTAATTGGTTAACCCG
14._EET_400_[ECU]___
AAAAGGGGCCGGTTAATTGGTTAACCCG
15._EET_400_[ECU]___
____GG____CG________ATAA__GG
16._EET_400_[ECU]___
____GG____GG________TTAA__CG
17._EET_400_[ECU]___
____GG____GG________TTAA__CG
18._EET_400_[ECU]___
____GG____GG________TTAA__CG
19._EET_400_[ECU]___
____GG____GG________TTAA__CG
20._EET_400_[ECU]___
____GG____GG________TTAA__CG
21._EET_400_[ECU]___
ATAAGGGG__CCGGAAAGGGATAACGCC
22._EET_400_[ECU]___
ATACGGGG__GGGGAAAAGGAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGGGCCAAGTGGTTAGCCGGCC
1._EET_400_[ECU]___
AATTGTGGGGCCAAGTGGTTAGCCGGCC
2._EET_400_[ECU]___
AATTGTGGGGCCAAGTGGTTAGCCGGCC
3._EET_400_[ECU]___
AA______GG__AAGT____AG______
4._EET_400_[ECU]___
AA______GG__AAGT____AG______
5._EET_400_[ECU]___
AA______GG__AAGT____AG______
6._EET_400_[ECU]___
AA______GG__AAGT____AG______
7._EET_400_[ECU]___
AA______GG__AGGT____AG______
8._EET_400_[ECU]___
AA______GG__AAGT____AG______
9._EET_400_[ECU]___
______GGCGCCAAGT____AGCC____
10._EET_400_[ECU]___
AATTGGGGGGCCGGGGGGTTAACCGGCC
11._EET_400_[ECU]___
AATTGGGGGGCCGGGGGGTTAACCGGCC
12._EET_400_[ECU]___
AATTGGGGGGCCGGGGGGTTAACCGGCC
13._EET_400_[ECU]___
AATTGGGGGGCCGGGGGGTTAACCGGCC
14._EET_400_[ECU]___
AATTGGGGGGCCGGGGGGTTAACCGGCC
15._EET_400_[ECU]___
AA______GG__AGGG____AG______
16._EET_400_[ECU]___
AA______GG__GGGG____AA______
17._EET_400_[ECU]___
AA______GG__GGGG____AA______
18._EET_400_[ECU]___
AA______GG__GGGG____AA______
19._EET_400_[ECU]___
AA______GG__GGGG____AA______
20._EET_400_[ECU]___
AA______GG__GGGG____AA______
21._EET_400_[ECU]___
ATAAACAGCGACAAAACCAAAAGGGGGG
22._EET_400_[ECU]___
ATAAAAAGCGACAAACCCAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCACGGGGGTCTCCTT
1._EET_400_[ECU]___
GGTTTTAGAGAACCACGGGGGTCTCCTT
2._EET_400_[ECU]___
GGTTTTAGAGAACCACGGGGGTCTCCTT
3._EET_400_[ECU]___
____TT________________CTCC__
4._EET_400_[ECU]___
____TT________________CTCC__
5._EET_400_[ECU]___
____TT________________CTCC__
6._EET_400_[ECU]___
____TT________________CTCC__
7._EET_400_[ECU]___
____TT________________CTCC__
8._EET_400_[ECU]___
____TT________________CT____
9._EET_400_[ECU]___
GGTT____AG____________CT__TT
10._EET_400_[ECU]___
GGTTTTAAGGAACCCCGGAAGGCTCCTT
11._EET_400_[ECU]___
GGTTTTAAGGAACCCCGGAAGG__CCTT
12._EET_400_[ECU]___
GGTTTTAAGGAACCCCGGAAGGCCCCTT
13._EET_400_[ECU]___
GGTTTTAAGGAACCCCGGAAGGCCCCTT
14._EET_400_[ECU]___
GGTTTTAAGGAACCCCGGAAGGCCCCTT
15._EET_400_[ECU]___
____TT________________CTCC__
16._EET_400_[ECU]___
____TT________________CTCC__
17._EET_400_[ECU]___
____TT__________________CC__
18._EET_400_[ECU]___
____TT________________CCCC__
19._EET_400_[ECU]___
____TT________________CCCC__
20._EET_400_[ECU]___
____TT________________CCCC__
21._EET_400_[ECU]___
CC__AG__AAAAGG__AGAGCCAAGGAA
22._EET_400_[ECU]___
CC__AA__GGAGAG__GGAGCCAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCTTCCGGGGACAGGGGGAGTTCC
1._EET_400_[ECU]___
GGCCCCTTCCGGGGACAGGGGGAGTTCC
2._EET_400_[ECU]___
GGCCCCTTCCGGGGACAGGGGGAGTTCC
3._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
4._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
5._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
6._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
7._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
8._EET_400_[ECU]___
______TTCCGG__ACAGGGGG______
9._EET_400_[ECU]___
__CCCCTTCC__GGACAGGGGGAG____
10._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
11._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
12._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
13._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
14._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
15._EET_400_[ECU]___
__CC__CCACGG__ACAATTGG______
16._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
17._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
18._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
19._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
20._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
21._EET_400_[ECU]___
GGGGGGAGCCCGGGCCAGCCCCAG____
22._EET_400_[ECU]___
GGGGGGAGCCCGGGACAGCCACAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTACAGACCCAGACCCCCATACCTTT
1._EET_400_[ECU]___
AACTACAGACCCAGACCCCCATACCTTT
2._EET_400_[ECU]___
AACTACAGACCCAGACCCCCATACCTTT
3._EET_400_[ECU]___
AACT__________ACCC______CTTT
4._EET_400_[ECU]___
AACT__________ACCC______CTTT
5._EET_400_[ECU]___
AACT__________ACCC______CTTT
6._EET_400_[ECU]___
AACT__________ACCC______CTTT
7._EET_400_[ECU]___
AACT__________ACCC______CTTT
8._EET_400_[ECU]___
AACT__________ACCC______CTTT
9._EET_400_[ECU]___
______________ACCC____ACCT__
10._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
11._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
12._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
13._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
14._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
15._EET_400_[ECU]___
AATT__________ACGG______TTCT
16._EET_400_[ECU]___
AATT__________CCGG______CCTT
17._EET_400_[ECU]___
AATT__________CCGG______CCTT
18._EET_400_[ECU]___
AATT__________CCGG______CCTT
19._EET_400_[ECU]___
AATT__________CCGG______CCTT
20._EET_400_[ECU]___
AATT__________CCGG______CCTT
21._EET_400_[ECU]___
__GGCCGGACAC__ACCGGGATCCAAAA
22._EET_400_[ECU]___
__AGACAGACAC__ACCGGGATCCAGAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
1._EET_400_[ECU]___
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
2._EET_400_[ECU]___
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
3._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
4._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
5._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
6._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
7._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
8._EET_400_[ECU]___
____AG__CCGT______X_XX_XX_XX_XX_X
9._EET_400_[ECU]___
____AGCCCTGT______X_XX_XX_XX_XX_X
10._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
11._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
12._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
13._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
14._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
15._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
16._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
17._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
18._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
19._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
20._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
21._EET_400_[ECU]___
__AG____AGACAGATGGX_XX_XX_XX_XX_X
22._EET_400_[ECU]___
__AG____AGACAGATGGX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

4._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

5._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

6._EET_400_[ECU]

98.8 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._EET_400_[ECU]

97.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

93.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._EET_400_[ECU] GC-01-066-4-02

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._EET_400_[ECU]

70 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

19._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

42.4 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

41.1 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240