SNP Profiles of GU 296 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
13._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
15._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
16._RUQ_230
____AC____CC________________
17._GC-01-76-4-12
AA__ACGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGCCGGTTAATTGGTTAACCGGAATT
1._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
2._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
3._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
4._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
5._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
6._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
7._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
8._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
9._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
10._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
11._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
12._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
13._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
14._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
15._GC-01-076-4-12
CCGGCCGGTTAATTGGTTAACCGGAATT
16._RUQ_230
__GG__________________GG____
17._GC-01-76-4-12
CCGG__GGAAGGAAGGTTAAGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
1._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
2._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
3._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
4._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
5._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
6._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
7._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
8._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
9._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
10._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
11._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
12._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
13._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
14._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
15._GC-01-076-4-12
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
16._RUQ_230
____CC__GG________CC________
17._GC-01-76-4-12
AAGGCCCCGGAACCCCGGGGGGGGCC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
11._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
12._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
13._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
14._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
15._GC-01-076-4-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
16._RUQ_230
____GG____________________GG
17._GC-01-76-4-12
AA__GGAAGG__GGGGAAAGAAGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCGG
1._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
2._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
3._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
4._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
5._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
6._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
7._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
8._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
9._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
10._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
11._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
12._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
13._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
14._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
15._GC-01-076-4-12
CCCCCCAAGGGGAAGGGGGGAACCCCGG
16._RUQ_230
____________AAGG__GGAA____AA
17._GC-01-76-4-12
GGGGGGAAGGGGAAGGCCCCAA______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAAAGCCCCGGAACGCCTTAACCCTCC
1._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
2._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
3._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
4._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
5._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
6._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
7._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
8._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
9._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
10._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
11._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
12._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
13._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
14._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
15._GC-01-076-4-12
CCAAAGCCCCGGAACGCCTTAACCCTCC
16._RUQ_230
____________AACG____AA____CC
17._GC-01-76-4-12
GGAAAGCCCC__AACGGGTTAAGGAG__
 85 86 87 88 89 90 91 92       
_Input profile
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
15._GC-01-076-4-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
16._RUQ_230
____CC__TT______X_XX_XX_XX_XX_XX_X
17._GC-01-76-4-12
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_296_/H GC-01-076-4-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

1._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._GU_296_/H RUQ_230

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._GU_296_/H GC-01-76-4-12

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240