SNP Profiles of GU 154 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-078-4-14
AACCACGGGGCTCC__CCGGTTCCTTAA
13._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GU_154_/C
AACCAC________CCCCGG__CC____
15._GU_154_/C
AACCAC________CCCCGG__CC____
16._GU_154_/C
AACCAC________CCCCGG__CC____
17._GU_154_/C
AACCAC________CCCCGG__CC____
18._GU_154_/C
AACCAC________CCCCGG__CC____
19._GU_154_/C
AACCAC________CCCCGG__CC____
20._GU_154_/C
AACCAC________CCCCGG__CC____
21._GU_154_/C
AACCAC________CCCCGG__CC____
22._GU_154_/C
AACCAC________CCCCGG__CC____
23._GU_154_/C
AACCAC________CCCCGG__CC____
24._GU_154_/C
AACCAC________CCCCGG__CC____
25._GU_154_/C
AACCAC________CCCCGG__CC____
26._GU_154_/C
AACCAC__________CCGG__CC____
27._GU_154_/C
AACCAC________CCCCGG__CC____
28._GC-01-78-4-14
AA__ACGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGCTAATTGGATCCGGAATT
1._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
2._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
3._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
4._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
5._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
6._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
7._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
8._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
9._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
10._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
11._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
12._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
13._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
14._GU_154_/C
__GG____GG________AT__GGAA__
15._GU_154_/C
__GG____GG________AT__GGAA__
16._GU_154_/C
__GG____GG________AT__GGAA__
17._GU_154_/C
__GG____GG________AT__GGAA__
18._GU_154_/C
__GG____GG________AT__GGAA__
19._GU_154_/C
__GG____GG________AT__GGAA__
20._GU_154_/C
__GG____GG________AT__GGAA__
21._GU_154_/C
__GG____GG________AT__GGAA__
22._GU_154_/C
__GG____GG________AT__GGAA__
23._GU_154_/C
__GG____GG________AT__GGAA__
24._GU_154_/C
__GG____GG________AT__GGAA__
25._GU_154_/C
__GG____GG________AT__GGAA__
26._GU_154_/C
__GG____GG________AT__GGAA__
27._GU_154_/C
__GG____GG________AT__GGAA__
28._GC-01-78-4-14
CCGGCC__GGAGGGAAGGATGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
1._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
2._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
3._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
4._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
5._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
6._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
7._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
8._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
9._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
10._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
11._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
12._GC-01-078-4-14
TTGGCC__AGTTGGGGGGCCGGCCGGTT
13._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCC__CCGG__
14._GU_154_/C
____CC__AGTT____GG__________
15._GU_154_/C
____CC__AGTT____GG__________
16._GU_154_/C
____CC__AGTT____GG__________
17._GU_154_/C
____CC__AGTT____GG__________
18._GU_154_/C
____CC__AGTT____GG__________
19._GU_154_/C
____CC__AGTT____GG__________
20._GU_154_/C
____CC__AGTT____GG__________
21._GU_154_/C
____CC__AGTT____GG__________
22._GU_154_/C
____CC__AGTT____GG__________
23._GU_154_/C
____CC__AGTT____GG__________
24._GU_154_/C
____CC__AGTT____GG__________
25._GU_154_/C
____CC__AGTT____GG__________
26._GU_154_/C
____CC__AGTT____GG__________
27._GU_154_/C
____CC__AGTT____GG__________
28._GC-01-78-4-14
AAGGCCCCAGAACCCCGGGGGGGGCC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
11._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
12._GC-01-078-4-14
TTAAGG__CCCCGGGGTTTTTTCCTTGG
13._GC-01-078-4-14
TTAAGG__CCCCGGGGTTTTTTCCTTGG
14._GU_154_/C
TT__________________TTCC____
15._GU_154_/C
TT__________________TTCC____
16._GU_154_/C
TT__________________TTCC____
17._GU_154_/C
TT__________________TTCC____
18._GU_154_/C
TT__________________TTCC____
19._GU_154_/C
TT__________________TTCC____
20._GU_154_/C
TT__________________TTCC____
21._GU_154_/C
TT__________________TTCC____
22._GU_154_/C
TT__________________TTCC____
23._GU_154_/C
TT__________________TTCC____
24._GU_154_/C
TT__________________TTCC____
25._GU_154_/C
TT__________________TTCC____
26._GU_154_/C
TT__________________TTCC____
27._GU_154_/C
TT__________________TTCC____
28._GC-01-78-4-14
AA__GGAAGG__GGGGAAAAAAGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCGG
1._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
2._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
3._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
4._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
5._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
6._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
7._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
8._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
9._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
10._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
11._GC-01-078-4-14
CCCCCC__GGGGAAGGGGGGAACCCCGG
12._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
13._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCC__
14._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
15._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
16._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
17._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
18._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
19._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
20._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
21._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
22._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
23._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
24._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
25._GU_154_/C
CC__CCAAGG__AAGGGGGG________
26._GU_154_/C
CC__CCAAGG__AAGGGGGG______GG
27._GU_154_/C
CC__CC__GG__AAGGGGGG______GG
28._GC-01-78-4-14
GGGGGGAAGGGGAAGGCCCCAA______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCACAACCCCGGAACGCCTTAACCCCCC
1._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
2._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
3._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
4._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
5._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
6._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
7._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
8._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
9._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
10._GC-01-078-4-14
CCACAACCCC__AACGCCTTAACCCCCC
11._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
12._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
13._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
14._GU_154_/C
CC__________AACG______CCCCCC
15._GU_154_/C
CC__________AACG______CCCCCC
16._GU_154_/C
CC__________AACG______CCCCCC
17._GU_154_/C
CC__________AACG______CCCCCC
18._GU_154_/C
CC__________AACG______CCCCCC
19._GU_154_/C
CC__________AACG______CCCCCC
20._GU_154_/C
CC__________AACG______CCCCCC
21._GU_154_/C
CC__________AACG______CCCCCC
22._GU_154_/C
CC__________AACG______CCCCCC
23._GU_154_/C
CC__________AACG______CCCCCC
24._GU_154_/C
CC__________AACG______CCCCCC
25._GU_154_/C
CC__________AACG______CCCCCC
26._GU_154_/C
CC__________AACG______CCCCCC
27._GU_154_/C
CC__________AACG______CCCCCC
28._GC-01-78-4-14
GGACAACCCC__AACGGGTTAAGGGG__
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
18._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
19._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
20._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
21._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
22._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
23._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
24._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
25._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
26._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
27._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016

16._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

19._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

20._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

21._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

22._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

23._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

25._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

26._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

27._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240