SNP Profiles of GU-154C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
13._GC-01-078-4-14
AACCACGGGGCTCC__CCGGTTCCTTAA
14._GU_154_/C
AACCAC________CCCCGG__CC____
15._GU_154_/C
AACCAC________CCCCGG__CC____
16._GU_154_/C
AACCAC________CCCCGG__CC____
17._GU_154_/C
AACCAC________CCCCGG__CC____
18._GU_154_/C
AACCAC________CCCCGG__CC____
19._GU_154_/C
AACCAC________CCCCGG__CC____
20._GU_154_/C
AACCAC________CCCCGG__CC____
21._GU_154_/C
AACCAC________CCCCGG__CC____
22._GU_154_/C
AACCAC________CCCCGG__CC____
23._GU_154_/C
AACCAC________CCCCGG__CC____
24._GU_154_/C
AACCAC________CCCCGG__CC____
25._GU_154_/C
AACCAC__________CCGG__CC____
26._GU_154_/C
AACCAC________CCCCGG__CC____
27._GU_154_/C
AACCAC________CCCCGG__CC____
28._GC-01-78-4-14
AA__ACGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
10._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
11._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
12._GC-01-078-4-14
CCGGGGCCGGCTAATTGGAT__CCGGAA
13._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
14._GU_154_/C
__GG____GG________ATAA__GGAA
15._GU_154_/C
__GG____GG________ATAA__GGAA
16._GU_154_/C
__GG____GG________ATAA__GGAA
17._GU_154_/C
__GG____GG________ATAA__GGAA
18._GU_154_/C
__GG____GG________ATAA__GGAA
19._GU_154_/C
__GG____GG________ATAA__GGAA
20._GU_154_/C
__GG____GG________ATAA__GGAA
21._GU_154_/C
__GG____GG________ATAA__GGAA
22._GU_154_/C
__GG____GG________ATAA__GGAA
23._GU_154_/C
__GG____GG________ATAA__GGAA
24._GU_154_/C
__GG____GG________ATAA__GGAA
25._GU_154_/C
__GG____GG________ATAA__GGAA
26._GU_154_/C
__GG____GG________ATAA__GGAA
27._GU_154_/C
__GG____GG________AT____GGAA
28._GC-01-78-4-14
CCGGCC__GGAGGGAAGGATAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
1._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
2._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
3._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
4._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
5._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
6._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
7._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
8._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
9._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
10._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
11._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
12._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
13._GC-01-078-4-14
TTTTGGCC__AGTTGGGGGGCCCCGGTT
14._GU_154_/C
______CC__AGTT____GG______TT
15._GU_154_/C
______CC__AGTT____GG______TT
16._GU_154_/C
______CC__AGTT____GG______TT
17._GU_154_/C
______CC__AGTT____GG______TT
18._GU_154_/C
______CC__AGTT____GG______TT
19._GU_154_/C
______CC__AGTT____GG______TT
20._GU_154_/C
______CC__AGTT____GG______TT
21._GU_154_/C
______CC__AGTT____GG______TT
22._GU_154_/C
______CC__AGTT____GG______TT
23._GU_154_/C
______CC__AGTT____GG______TT
24._GU_154_/C
______CC__AGTT____GG______TT
25._GU_154_/C
______CC__AGTT____GG______TT
26._GU_154_/C
______CC__AGTT____GG______TT
27._GU_154_/C
______CC__AGTT____GG______TT
28._GC-01-78-4-14
AAAAGGCCCCAGAACCCCGGGGGGCCAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
1._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
2._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
3._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
4._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
5._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
6._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
7._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
8._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
9._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
10._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
11._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
12._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
13._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
14._GU_154_/C
________________TTCC____CC__
15._GU_154_/C
________________TTCC____CC__
16._GU_154_/C
________________TTCC____CC__
17._GU_154_/C
________________TTCC____CC__
18._GU_154_/C
________________TTCC____CC__
19._GU_154_/C
________________TTCC____CC__
20._GU_154_/C
________________TTCC____CC__
21._GU_154_/C
________________TTCC____CC__
22._GU_154_/C
________________TTCC____CC__
23._GU_154_/C
________________TTCC____CC__
24._GU_154_/C
________________TTCC____CC__
25._GU_154_/C
________________TTCC____CC__
26._GU_154_/C
________________TTCC____CC__
27._GU_154_/C
________________TTCC____CC__
28._GC-01-78-4-14
__GGGG__GGGGAAAAAAGGAAGGGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCAAGGGGAAGGGGGGAACCCCCCACAA
1._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
2._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
3._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
4._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
5._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
6._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
7._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
8._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
9._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
10._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
11._GC-01-078-4-14
CC__GGGGAAGGGGGGAACCCCCCACAA
12._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
13._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
14._GU_154_/C
CCAAGG__AAGGGGGG______CC____
15._GU_154_/C
CCAAGG__AAGGGGGG______CC____
16._GU_154_/C
CCAAGG__AAGGGGGG______CC____
17._GU_154_/C
CCAAGG__AAGGGGGG______CC____
18._GU_154_/C
CCAAGG__AAGGGGGG______CC____
19._GU_154_/C
CCAAGG__AAGGGGGG______CC____
20._GU_154_/C
CCAAGG__AAGGGGGG______CC____
21._GU_154_/C
CCAAGG__AAGGGGGG______CC____
22._GU_154_/C
CCAAGG__AAGGGGGG______CC____
23._GU_154_/C
CCAAGG__AAGGGGGG______CC____
24._GU_154_/C
CCAAGG__AAGGGGGG______CC____
25._GU_154_/C
CCAAGG__AAGGGGGG______CC____
26._GU_154_/C
CC__GG__AAGGGGGG______CC____
27._GU_154_/C
CCAAGG__AAGGGGGG______CC____
28._GC-01-78-4-14
GGAAGGGGAAGGCCCCAA____GGACAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCGGAACGCCTTAACCCCCCCCGGCC
1._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
2._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
3._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
4._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
5._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
6._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
7._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
8._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
9._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
10._GC-01-078-4-14
CCCC__AACGCCTTAACCCCCCCCGGCC
11._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
12._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
13._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
14._GU_154_/C
______AACG______CCCCCC__GG__
15._GU_154_/C
______AACG______CCCCCC__GG__
16._GU_154_/C
______AACG______CCCCCC__GG__
17._GU_154_/C
______AACG______CCCCCC__GG__
18._GU_154_/C
______AACG______CCCCCC__GG__
19._GU_154_/C
______AACG______CCCCCC__GG__
20._GU_154_/C
______AACG______CCCCCC__GG__
21._GU_154_/C
______AACG______CCCCCC__GG__
22._GU_154_/C
______AACG______CCCCCC__GG__
23._GU_154_/C
______AACG______CCCCCC__GG__
24._GU_154_/C
______AACG______CCCCCC__GG__
25._GU_154_/C
______AACG______CCCCCC__GG__
26._GU_154_/C
______AACG______CCCCCC__GG__
27._GU_154_/C
______AACG______CCCCCC__GG__
28._GC-01-78-4-14
CCCC__AACGGGTTAAGGGG__GG____
 85 86 87 88 89          
_Input profile
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GU_154_/C
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
GGAAAATTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
87 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016

16._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

19._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

20._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

21._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

22._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

23._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

25._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

26._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

27._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

46.8 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP894
41TcSNP1063 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP944
46TcSNP1242 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP1309
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1439 57TcSNP1442 58TcSNP193 59TcSNP25 60TcSNP364
61TcSNP144 62TcSNP230 63TcSNP560 64TcSNP723 65TcSNP731
66TcSNP701 67TcSNP1041 68TcSNP917 69Tcm003s01336581 70Tcm003s07402719
71Tcm001s00947643 72Tcm006s26664133 73Tcm002s20575712 74TcSNP529 75TcSNP1458
76TcSNP60 77TcSNP430 78TcSNP823 79TcSNP619 80TcSNP994
81TcSNP1144 82TcSNP1156 83TcSNP469 84TcSNP999 85TcSNP242
86TcSNP1253 87TcSNP1414 88TcSNP154 89TcSNP240