SNP Profiles of GU 154 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCGGTTCCTTAACC
1._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
2._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
3._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
4._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
5._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
6._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
7._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
8._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
9._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
10._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
11._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
12._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
13._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
14._GU_154_/C
AACCAC________CCGG__CC______
15._GU_154_/C
AACCAC________CCGG__CC______
16._GU_154_/C
AACCAC________CCGG__CC______
17._GU_154_/C
AACCAC________CCGG__CC______
18._GU_154_/C
AACCAC________CCGG__CC______
19._GU_154_/C
AACCAC________CCGG__CC______
20._GU_154_/C
AACCAC________CCGG__CC______
21._GU_154_/C
AACCAC________CCGG__CC______
22._GU_154_/C
AACCAC________CCGG__CC______
23._GU_154_/C
AACCAC________CCGG__CC______
24._GU_154_/C
AACCAC________CCGG__CC______
25._GU_154_/C
AACCAC________CCGG__CC______
26._GU_154_/C
AACCAC________CCGG__CC______
27._GU_154_/C
AACCAC________CCGG__CC______
28._GC-01-78-4-14
AA__ACGGGG__GG__GGAAGGAATTCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGCCGGCTAATTGGATAACCGGAATT
1._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
2._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
3._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
4._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
5._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
6._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
7._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
8._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
9._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
10._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
11._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
12._GC-01-078-4-14
GGGGCCGGCTAATTGGAT__CCGGAATT
13._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
14._GU_154_/C
GG____GG________ATAA__GGAA__
15._GU_154_/C
GG____GG________ATAA__GGAA__
16._GU_154_/C
GG____GG________ATAA__GGAA__
17._GU_154_/C
GG____GG________ATAA__GGAA__
18._GU_154_/C
GG____GG________ATAA__GGAA__
19._GU_154_/C
GG____GG________ATAA__GGAA__
20._GU_154_/C
GG____GG________ATAA__GGAA__
21._GU_154_/C
GG____GG________ATAA__GGAA__
22._GU_154_/C
GG____GG________ATAA__GGAA__
23._GU_154_/C
GG____GG________ATAA__GGAA__
24._GU_154_/C
GG____GG________ATAA__GGAA__
25._GU_154_/C
GG____GG________ATAA__GGAA__
26._GU_154_/C
GG____GG________ATAA__GGAA__
27._GU_154_/C
GG____GG________AT____GGAA__
28._GC-01-78-4-14
GGCC__GGAGGGAAGGATAAGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
1._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
2._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
3._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
4._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
5._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
6._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
7._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
8._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
9._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
10._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
11._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
12._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
13._GC-01-078-4-14
TTGGCCAGTTGGGGGGCC__CCGG__TT
14._GU_154_/C
____CCAGTT____GG__________TT
15._GU_154_/C
____CCAGTT____GG__________TT
16._GU_154_/C
____CCAGTT____GG__________TT
17._GU_154_/C
____CCAGTT____GG__________TT
18._GU_154_/C
____CCAGTT____GG__________TT
19._GU_154_/C
____CCAGTT____GG__________TT
20._GU_154_/C
____CCAGTT____GG__________TT
21._GU_154_/C
____CCAGTT____GG__________TT
22._GU_154_/C
____CCAGTT____GG__________TT
23._GU_154_/C
____CCAGTT____GG__________TT
24._GU_154_/C
____CCAGTT____GG__________TT
25._GU_154_/C
____CCAGTT____GG__________TT
26._GU_154_/C
____CCAGTT____GG__________TT
27._GU_154_/C
____CCAGTT____GG__________TT
28._GC-01-78-4-14
AAGGCCAGAACCCCGGGGGGGGCC__AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
1._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
2._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
3._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
4._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
5._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
6._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
7._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
8._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
9._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
10._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
11._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
12._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
13._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
14._GU_154_/C
________________TTCC____CC__
15._GU_154_/C
________________TTCC____CC__
16._GU_154_/C
________________TTCC____CC__
17._GU_154_/C
________________TTCC____CC__
18._GU_154_/C
________________TTCC____CC__
19._GU_154_/C
________________TTCC____CC__
20._GU_154_/C
________________TTCC____CC__
21._GU_154_/C
________________TTCC____CC__
22._GU_154_/C
________________TTCC____CC__
23._GU_154_/C
________________TTCC____CC__
24._GU_154_/C
________________TTCC____CC__
25._GU_154_/C
________________TTCC____CC__
26._GU_154_/C
________________TTCC____CC__
27._GU_154_/C
________________TTCC____CC__
28._GC-01-78-4-14
__GGGG__GGGGAAAAAAGGAAGGGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCAAGGGGAAGGGGGGAACCCCGGCCAC
1._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
2._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
3._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
4._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
5._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
6._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
7._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
8._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
9._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
10._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
11._GC-01-078-4-14
CC__GGGGAAGGGGGGAACCCCGGCCAC
12._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
13._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCC__CCAC
14._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
15._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
16._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
17._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
18._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
19._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
20._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
21._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
22._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
23._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
24._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
25._GU_154_/C
CCAAGG__AAGGGGGG________CC__
26._GU_154_/C
CC__GG__AAGGGGGG______GGCC__
27._GU_154_/C
CCAAGG__AAGGGGGG______GGCC__
28._GC-01-78-4-14
GGAAGGGGAAGGCCCCAA______GGAC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCCCGGAACGCCTTAACCCCCCCCGG
1._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
2._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
3._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
4._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
5._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
6._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
7._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
8._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
9._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
10._GC-01-078-4-14
AACCCC__AACGCCTTAACCCCCCCCGG
11._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
12._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
13._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
14._GU_154_/C
________AACG______CCCCCC__GG
15._GU_154_/C
________AACG______CCCCCC__GG
16._GU_154_/C
________AACG______CCCCCC__GG
17._GU_154_/C
________AACG______CCCCCC__GG
18._GU_154_/C
________AACG______CCCCCC__GG
19._GU_154_/C
________AACG______CCCCCC__GG
20._GU_154_/C
________AACG______CCCCCC__GG
21._GU_154_/C
________AACG______CCCCCC__GG
22._GU_154_/C
________AACG______CCCCCC__GG
23._GU_154_/C
________AACG______CCCCCC__GG
24._GU_154_/C
________AACG______CCCCCC__GG
25._GU_154_/C
________AACG______CCCCCC__GG
26._GU_154_/C
________AACG______CCCCCC__GG
27._GU_154_/C
________AACG______CCCCCC__GG
28._GC-01-78-4-14
AACCCC__AACGGGTTAAGGGG__GG__
 85 86 87 88 89 90         
_Input profile
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
15._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
16._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
17._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
18._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
19._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
20._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
21._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
22._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
23._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
24._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
25._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
26._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
27._GU_154_/C
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
__GGAAAATTGGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
87 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016

16._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

19._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

20._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

21._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

22._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

23._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

25._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

26._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

27._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

47.4 %
76 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP998 33TcSNP150 34TcSNP28 35TcSNP751
36TcSNP1484 37TcSNP602 38TcSNP561 39TcSNP894 40TcSNP1063
41TcSNP1126 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP944
46TcSNP1242 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP1309
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1439 57TcSNP1442 58TcSNP193 59TcSNP25 60TcSNP364
61TcSNP144 62TcSNP230 63TcSNP560 64TcSNP723 65TcSNP731
66TcSNP701 67TcSNP1041 68TcSNP645 69TcSNP917 70Tcm003s01336581
71Tcm003s07402719 72Tcm001s00947643 73Tcm006s26664133 74Tcm002s20575712 75TcSNP529
76TcSNP1458 77TcSNP60 78TcSNP430 79TcSNP823 80TcSNP619
81TcSNP994 82TcSNP1144 83TcSNP1156 84TcSNP469 85TcSNP999
86TcSNP242 87TcSNP1253 88TcSNP1414 89TcSNP154 90TcSNP240