SNP Profiles of GU 154 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-078-4-14
AACCACGGGGCTCC__CCGGTTCCTTAA
13._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GU_154_/C
AACCAC________CCCCGG__CC____
15._GU_154_/C
AACCAC________CCCCGG__CC____
16._GU_154_/C
AACCAC________CCCCGG__CC____
17._GU_154_/C
AACCAC________CCCCGG__CC____
18._GU_154_/C
AACCAC________CCCCGG__CC____
19._GU_154_/C
AACCAC________CCCCGG__CC____
20._GU_154_/C
AACCAC________CCCCGG__CC____
21._GU_154_/C
AACCAC________CCCCGG__CC____
22._GU_154_/C
AACCAC________CCCCGG__CC____
23._GU_154_/C
AACCAC________CCCCGG__CC____
24._GU_154_/C
AACCAC________CCCCGG__CC____
25._GU_154_/C
AACCAC__________CCGG__CC____
26._GU_154_/C
AACCAC________CCCCGG__CC____
27._GU_154_/C
AACCAC________CCCCGG__CC____
28._GC-01-78-4-14
AA__ACGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
10._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
11._GC-01-078-4-14
CCGGGGCCGGCTAATTGGAT__CCGGAA
12._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
13._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
14._GU_154_/C
__GG____GG________ATAA__GGAA
15._GU_154_/C
__GG____GG________ATAA__GGAA
16._GU_154_/C
__GG____GG________ATAA__GGAA
17._GU_154_/C
__GG____GG________ATAA__GGAA
18._GU_154_/C
__GG____GG________ATAA__GGAA
19._GU_154_/C
__GG____GG________ATAA__GGAA
20._GU_154_/C
__GG____GG________ATAA__GGAA
21._GU_154_/C
__GG____GG________ATAA__GGAA
22._GU_154_/C
__GG____GG________ATAA__GGAA
23._GU_154_/C
__GG____GG________ATAA__GGAA
24._GU_154_/C
__GG____GG________ATAA__GGAA
25._GU_154_/C
__GG____GG________ATAA__GGAA
26._GU_154_/C
__GG____GG________ATAA__GGAA
27._GU_154_/C
__GG____GG________AT____GGAA
28._GC-01-78-4-14
CCGGCC__GGAGGGAAGGATAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
1._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
2._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
3._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
4._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
5._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
6._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
7._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
8._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
9._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
10._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
11._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
12._GC-01-078-4-14
TTTTGGCC__AGTTGGGGGGCCGGCCGG
13._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCC__CCGG
14._GU_154_/C
______CC__AGTT____GG________
15._GU_154_/C
______CC__AGTT____GG________
16._GU_154_/C
______CC__AGTT____GG________
17._GU_154_/C
______CC__AGTT____GG________
18._GU_154_/C
______CC__AGTT____GG________
19._GU_154_/C
______CC__AGTT____GG________
20._GU_154_/C
______CC__AGTT____GG________
21._GU_154_/C
______CC__AGTT____GG________
22._GU_154_/C
______CC__AGTT____GG________
23._GU_154_/C
______CC__AGTT____GG________
24._GU_154_/C
______CC__AGTT____GG________
25._GU_154_/C
______CC__AGTT____GG________
26._GU_154_/C
______CC__AGTT____GG________
27._GU_154_/C
______CC__AGTT____GG________
28._GC-01-78-4-14
AAAAGGCCCCAGAACCCCGGGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
11._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-01-078-4-14
TTTTAAGG__CCCCGGGGTTTTTTCCTT
13._GC-01-078-4-14
__TTAAGG__CCCCGGGGTTTTTTCCTT
14._GU_154_/C
__TT__________________TTCC__
15._GU_154_/C
__TT__________________TTCC__
16._GU_154_/C
__TT__________________TTCC__
17._GU_154_/C
__TT__________________TTCC__
18._GU_154_/C
__TT__________________TTCC__
19._GU_154_/C
__TT__________________TTCC__
20._GU_154_/C
__TT__________________TTCC__
21._GU_154_/C
__TT__________________TTCC__
22._GU_154_/C
__TT__________________TTCC__
23._GU_154_/C
__TT__________________TTCC__
24._GU_154_/C
__TT__________________TTCC__
25._GU_154_/C
__TT__________________TTCC__
26._GU_154_/C
__TT__________________TTCC__
27._GU_154_/C
__TT__________________TTCC__
28._GC-01-78-4-14
__AA__GGAAGG__GGGGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
10._GC-01-078-4-14
GGCCCCCC__GGGGAAGGGGGGAACCCC
11._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
12._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
13._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
14._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
15._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
16._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
17._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
18._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
19._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
20._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
21._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
22._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
23._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
24._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
25._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
26._GU_154_/C
__CC__CC__GG__AAGGGGGG______
27._GU_154_/C
__CC__CCAAGG__AAGGGGGG______
28._GC-01-78-4-14
GGGGGGGGAAGGGGAAGGCCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGCCACAACCCCAACGCCTTAACCCCCC
1._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
2._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
3._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
4._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
5._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
6._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
7._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
8._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
9._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
10._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
11._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
12._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
13._GC-01-078-4-14
__CCACAACCCCAACGCCTTAACCCCCC
14._GU_154_/C
GGCC________AACG______CCCCCC
15._GU_154_/C
GGCC________AACG______CCCCCC
16._GU_154_/C
GGCC________AACG______CCCCCC
17._GU_154_/C
GGCC________AACG______CCCCCC
18._GU_154_/C
GGCC________AACG______CCCCCC
19._GU_154_/C
GGCC________AACG______CCCCCC
20._GU_154_/C
GGCC________AACG______CCCCCC
21._GU_154_/C
GGCC________AACG______CCCCCC
22._GU_154_/C
GGCC________AACG______CCCCCC
23._GU_154_/C
GGCC________AACG______CCCCCC
24._GU_154_/C
__CC________AACG______CCCCCC
25._GU_154_/C
GGCC________AACG______CCCCCC
26._GU_154_/C
GGCC________AACG______CCCCCC
27._GU_154_/C
GGCC________AACG______CCCCCC
28._GC-01-78-4-14
__GGACAACCCCAACGGGTTAAGGGG__
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
18._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
19._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
20._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
21._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
22._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
23._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
24._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
25._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
26._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
27._GU_154_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016

16._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

19._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

20._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

21._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

22._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

23._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

25._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

26._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

27._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240