SNP Profiles of GU 147 /H   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAAGGGGCTCCCCCCGGTTCCTTAA
1._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
2._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
3._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
4._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
5._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
6._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
7._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
8._GU_147_/H___
AACCAAGGGGCTCCCCCCGGTTCCTTAA
9._GU_147_/H___
AACCAA________CCCCGG__CC____
10._GU_147_/H___
AACCAA________CCCCGG__CC____
11._GU_147_/H___
AACCAA________CCCCGG__CC____
12._GU_147_/H___
AACCAA________CCCCGG__CC____
13._GU_147_/H___
AACCAA________CCCCGG__CC____
14._GU_147_/H___
AACCAA________CCCCGG__CC____
15._GU_147_/H___
AACCAA________CCCCGG__CC____
16._GU_147_/H___
AACCAA________CCCCGG__CC____
17._GU_147_/H___
AACCAA________CCCCGG__CC____
18._GU_147_/H___
__CCAA____CC__CC____TTCC____
19._GU_147_/H___
AACCAA________CCCCGG__CC____
20._GU_147_/H___
____AA____CC________________
21._GU_147_/H___
AA__AAGGGG__GGGG__GGAAGGAATT
22._GU_147_/H___
AA__CCGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GU_147_/H___
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GU_147_/H___
__GG____GG________ATAA__GGAA
10._GU_147_/H___
__GG____GG________ATAA__GGAA
11._GU_147_/H___
__GG____GG________ATAA__GGAA
12._GU_147_/H___
__GG____GG________ATAA__GGAA
13._GU_147_/H___
__GG____GG________ATAA__GGAA
14._GU_147_/H___
__GG____GG________ATAA__GGAA
15._GU_147_/H___
__GG____GG________ATAA__GGAA
16._GU_147_/H___
__GG____GG________ATAA__GGAA
17._GU_147_/H___
__GG____GG________ATAA__GGAA
18._GU_147_/H___
______CC________GG__AACCGG__
19._GU_147_/H___
__GG____GG________ATAA__GGAA
20._GU_147_/H___
__GGCT__________________GG__
21._GU_147_/H___
CCGGCC__GGAGGGAAGGATAAGGCCAA
22._GU_147_/H___
CCGGCC__GGAAAGAAGGATAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GU_147_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GU_147_/H___
______CC__GGTT____GG________
10._GU_147_/H___
______CC__GGTT____GG________
11._GU_147_/H___
______CC__GGTT____GG________
12._GU_147_/H___
______CC__GGTT____GG________
13._GU_147_/H___
______CC__GGTT____GG________
14._GU_147_/H___
______CC__GGTT____GG________
15._GU_147_/H___
______CC__GGTT____GG________
16._GU_147_/H___
______CC__GGTT____GG________
17._GU_147_/H___
______CC__GGTT____GG________
18._GU_147_/H___
____GGCCCCGGTT____GGCC____GG
19._GU_147_/H___
______CC__GGTT____GG________
20._GU_147_/H___
______CC__GG________CC______
21._GU_147_/H___
AAAAGGCCCCGGAA__CCGGGGGGGGCC
22._GU_147_/H___
AAAAGGCCCCAGAACCACAGGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GU_147_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GU_147_/H___
__TT__________________TTCC__
10._GU_147_/H___
__TT__________________TTCC__
11._GU_147_/H___
__TT__________________TTCC__
12._GU_147_/H___
__TT__________________TTCC__
13._GU_147_/H___
__TT__________________TTCC__
14._GU_147_/H___
__TT__________________TTCC__
15._GU_147_/H___
__TT__________________TTCC__
16._GU_147_/H___
__TT__________________TTCC__
17._GU_147_/H___
__TT__________________TTCC__
18._GU_147_/H___
TT____GG____________TTTT__TT
19._GU_147_/H___
__TT__________________TTCC__
20._GU_147_/H___
______GG____________________
21._GU_147_/H___
__AA__GGAAGG__GGGGAAAAAAGGAA
22._GU_147_/H___
__AA__GGAAGG__GGGGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GU_147_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GU_147_/H___
GGCCCCCCAAGGGG__GGGGGGAACCCC
9._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
10._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
11._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
12._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
13._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
14._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
15._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
16._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
17._GU_147_/H___
__CC__CCAAGG____GGGGGG______
18._GU_147_/H___
__CCCCCCAA__GGAAGGGGGGAA____
19._GU_147_/H___
__CC__CCAAGG__AAGGGGGG______
20._GU_147_/H___
GG____________AAGG__GGAA____
21._GU_147_/H___
GGGGGGGGAAGGGGAAGGCCCCAA____
22._GU_147_/H___
GGGGGGGGAAGGGGAAGGCCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGCCAAGGCCCCGGAACCCCTTAACTCC
1._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
2._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
3._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
4._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
5._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
6._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
7._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
8._GU_147_/H___
GGCCAAGGCCCCGGAACCCCTTAACTCC
9._GU_147_/H___
GGCC__________AACC______CTCC
10._GU_147_/H___
GGCC__________AACC______CTCC
11._GU_147_/H___
GGCC__________AACC______CTCC
12._GU_147_/H___
GGCC__________AACC______CTCC
13._GU_147_/H___
GGCC__________AACC______CTCC
14._GU_147_/H___
GGCC__________AACC______CTCC
15._GU_147_/H___
GGCC__________AACC______CTCC
16._GU_147_/H___
GGCC__________AACC______CTCC
17._GU_147_/H___
GGCC__________AACC______CTCC
18._GU_147_/H___
______________AACC____AACT__
19._GU_147_/H___
AACC__________AACC______CTCC
20._GU_147_/H___
AA____________AACC____AA____
21._GU_147_/H___
__GGAAGGCCCC__AAGGGGTTAAAGGG
22._GU_147_/H___
__GGAAAACCCC__AACCGGTTAAGGAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GU_147_/H___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
10._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
11._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
12._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
14._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
17._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
18._GU_147_/H___
____GGCCCCTT______X_XX_XX_XX_XX_X
19._GU_147_/H___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
20._GU_147_/H___
CC____CC__TT______X_XX_XX_XX_XX_X
21._GU_147_/H___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
22._GU_147_/H___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-080-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

1._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

10._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016

11._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

12._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

13._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

14._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

15._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

16._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

17._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

18._GU_147_/H RUQ_222

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H RUQ_222

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._GU_147_/H GC-01-80-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_147_/H RUQ_222

44.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240