SNP Profiles of SCA 24   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCCTTAATTTTTT
1._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
2._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
3._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
4._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
5._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
6._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
7._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
8._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
9._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
10._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
11._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
12._SCA_5___
ATCCCCCC________CCTTAA__TT__
13._SCA_5___
ATCCCCCC________CCTTAA__TT__
14._SCA_5___
ATCCCCCC________CCTTAA__TT__
15._SCA_5___
ATCCCCCC________CCTTAA__TT__
16._SCA_5___
ATCCCCCC________CCTTAA__TT__
17._SCA_5___
ATCCCCCC________CCTTAA__TT__
18._SCA_5___
ATCCCCCC________CCTTAA__TT__
19._SCA_5___
ATCCCCCC________CCTTAA__TT__
20._SCA_5___
ATCCCCCC________CCTTAA__TT__
21._SCA_5___
ATCCCCCC________CCTTAA__TT__
22._SCA_5___
ATCCCCCC________CCTTAA__TT__
23._SCA_5___
ATCCCCCC________CCTTAA__TT__
24._SCA_5___
ATCCCCCC________CCTTAA__TT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTACAAGGCCGGCGCCAACCGGAAAAGG
1._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
2._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
3._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
4._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
5._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
6._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
7._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
8._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
9._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
10._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
11._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
12._SCA_5___
______GG____CG________AAAA__
13._SCA_5___
______GG____CG________AAAA__
14._SCA_5___
______GG____CG________AAAA__
15._SCA_5___
______GG____CG________AAAA__
16._SCA_5___
______GG____CG________AAAA__
17._SCA_5___
______GG____CG________AAAA__
18._SCA_5___
______GG____CG________AAAA__
19._SCA_5___
______GG____CG________AAAA__
20._SCA_5___
______GG____CG________AAAA__
21._SCA_5___
______GG____CG________AAAA__
22._SCA_5___
______GG____CG________AAAA__
23._SCA_5___
______GG____CG________AAAA__
24._SCA_5___
______GG____CG________AAAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTAGCCCCAAGGTTTTAACCGG
1._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
2._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
3._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
4._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
5._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
6._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
7._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
8._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
9._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
10._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
11._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
12._SCA_5___
CCTT______CC__AAGG____AA____
13._SCA_5___
CCTT______CC__AAGG____AA____
14._SCA_5___
CCTT______CC__AAGG____AA____
15._SCA_5___
CCTT______CC__AAGG____AA____
16._SCA_5___
CCTT______CC__AAGG____AA____
17._SCA_5___
CCTT______CC__AAGG____AA____
18._SCA_5___
CCTT______CC__AAGG____AA____
19._SCA_5___
CCTT______CC__AAGG____AA____
20._SCA_5___
CCTT______CC__AAGG____AA____
21._SCA_5___
CCTT______CC__AAGG____AA____
22._SCA_5___
CCTT______CC__AAGG____AA____
23._SCA_5___
CCTT______CC__AAGG____AA____
24._SCA_5___
CCTT______CC__AAGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
1._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
2._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
3._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
4._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
5._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
6._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
7._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
8._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
9._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
10._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
11._SCA_5___
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
12._SCA_5___
______TT________________TTCC
13._SCA_5___
______TT________________TTCC
14._SCA_5___
______TT________________TTCC
15._SCA_5___
______TT________________TTCC
16._SCA_5___
______TT________________TTCC
17._SCA_5___
______TT________________TTCC
18._SCA_5___
______TT________________TTCC
19._SCA_5___
______TT________________TTCC
20._SCA_5___
______TT________________TTCC
21._SCA_5___
______TT________________TTCC
22._SCA_5___
______TT________________TTCC
23._SCA_5___
______TT________________TTCC
24._SCA_5___
______TT________________TTCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTCCCGGGACGGGGGGAACT
1._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
2._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
3._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
4._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
5._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
6._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
7._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
8._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
9._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
10._SCA_5___
TTGGCCCCTTCCCGGGACGGGGGGAACT
11._SCA_5___
__GGCCCCTTCCCGGGACGGGGGGAACT
12._SCA_5___
____CC__TTCCCG__ACGGGGGG____
13._SCA_5___
____CC__TTCCCG__ACGGGGGG____
14._SCA_5___
____CC__TTCCCG__ACGGGGGG____
15._SCA_5___
____CC__TTCCCG__ACGGGGGG____
16._SCA_5___
____CC__TTCCCG__ACGGGGGG____
17._SCA_5___
____CC__TTCCCG__ACGGGGGG____
18._SCA_5___
____CC__TTCCCG__ACGGGGGG____
19._SCA_5___
____CC__TTCCCG__ACGGGGGG____
20._SCA_5___
____CC__TTCCCG__ACGGGGGG____
21._SCA_5___
____CC__TTCCCG__ACGGGGGG____
22._SCA_5___
____CC__TTCCCG__ACGGGGGG____
23._SCA_5___
____CC__TTCCCG__ACGGGGGG____
24._SCA_5___
____CC__TTCCCG__ACGGGGGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAGCTCCGGCCCCAAAACCCCAACCTT
1._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
2._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
3._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
4._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
5._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
6._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
7._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
8._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
9._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
10._SCA_5___
CCAGCTCCGGCCCCAA__CCCCAACCTT
11._SCA_5___
CCAGCTCCGGCCCCAAAACCCCAACCTT
12._SCA_5___
__AGCT__________AACC______TT
13._SCA_5___
__AGCT__________AACC______TT
14._SCA_5___
__AGCT__________AACC______TT
15._SCA_5___
__AGCT__________AACC______TT
16._SCA_5___
__AGCT__________AACC______TT
17._SCA_5___
__AGCT__________AACC______TT
18._SCA_5___
__AGCT__________AACC______TT
19._SCA_5___
__AGCT__________AACC______TT
20._SCA_5___
__AGCT__________AACC______TT
21._SCA_5___
__AGCT__________AACC______TT
22._SCA_5___
__AGCT__________AACC______TT
23._SCA_5___
__AGCT____________CC______TT
24._SCA_5___
__GGCT__________AACC______TT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
1._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
2._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
3._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
4._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
5._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
6._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
7._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
8._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
9._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
10._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
11._SCA_5___
CCCCCCGGCCCTGTCTTTGGX_XX_XX_XX_X
12._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
13._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
14._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
15._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
16._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
17._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
18._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
19._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
20._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
21._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
22._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
23._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
24._SCA_5___
CCCC__GG__CTGTCT____X_XX_XX_XX_X

Input profile: SCA_5 GC-01-092-5-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

3._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

4._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

8._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._SCA_5 GC-01-092-5-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._SCA_5 GC-01-092-5-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

12._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 13 > F
 Dapeng Zhang, 2016

13._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 4 > FP
 Dapeng Zhang, 2016

14._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 5 > FP
 Dapeng Zhang, 2016

15._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 9 > FP
 Dapeng Zhang, 2016

16._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 15
 Dapeng Zhang, 2016

17._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 14
 Dapeng Zhang, 2016

18._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 12
 Dapeng Zhang, 2016

19._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 11
 Dapeng Zhang, 2016

20._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 10
 Dapeng Zhang, 2016

21._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 6
 Dapeng Zhang, 2016

22._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 1
 Dapeng Zhang, 2016

23._SCA_5

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 8
 Dapeng Zhang, 2016

24._SCA_5

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A25 T2
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240