SNP Profiles of SCA 24   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCCTTAATTTTTT
1._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
2._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
3._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
4._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
5._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
6._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
7._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
8._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
9._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
10._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
11._SCA_5___
ATCCCCCCAGAATTTTCCTTAATTTTTT
12._SCA_5___
ATCCCCCC________CCTTAA__TT__
13._SCA_5___
ATCCCCCC________CCTTAA__TT__
14._SCA_5___
ATCCCCCC________CCTTAA__TT__
15._SCA_5___
ATCCCCCC________CCTTAA__TT__
16._SCA_5___
ATCCCCCC________CCTTAA__TT__
17._SCA_5___
ATCCCCCC________CCTTAA__TT__
18._SCA_5___
ATCCCCCC________CCTTAA__TT__
19._SCA_5___
ATCCCCCC________CCTTAA__TT__
20._SCA_5___
ATCCCCCC________CCTTAA__TT__
21._SCA_5___
ATCCCCCC________CCTTAA__TT__
22._SCA_5___
ATCCCCCC________CCTTAA__TT__
23._SCA_5___
ATCCCCCC________CCTTAA__TT__
24._SCA_5___
ATCCCCCC________CCTTAA__TT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTACAAGGCCGGCGCCAACCGGAAAAGG
1._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
2._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
3._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
4._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
5._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
6._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
7._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
8._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
9._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
10._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
11._SCA_5___
TTACAAGGCCGGCGCCAACCGGAAAAGG
12._SCA_5___
______GG____CG________AAAA__
13._SCA_5___
______GG____CG________AAAA__
14._SCA_5___
______GG____CG________AAAA__
15._SCA_5___
______GG____CG________AAAA__
16._SCA_5___
______GG____CG________AAAA__
17._SCA_5___
______GG____CG________AAAA__
18._SCA_5___
______GG____CG________AAAA__
19._SCA_5___
______GG____CG________AAAA__
20._SCA_5___
______GG____CG________AAAA__
21._SCA_5___
______GG____CG________AAAA__
22._SCA_5___
______GG____CG________AAAA__
23._SCA_5___
______GG____CG________AAAA__
24._SCA_5___
______GG____CG________AAAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTAGCCCCAAGGTTTTAACCGG
1._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
2._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
3._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
4._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
5._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
6._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
7._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
8._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
9._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
10._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
11._SCA_5___
CCTTTTTTAGCCCCAAGGTTTTAACCGG
12._SCA_5___
CCTT______CC__AAGG____AA____
13._SCA_5___
CCTT______CC__AAGG____AA____
14._SCA_5___
CCTT______CC__AAGG____AA____
15._SCA_5___
CCTT______CC__AAGG____AA____
16._SCA_5___
CCTT______CC__AAGG____AA____
17._SCA_5___
CCTT______CC__AAGG____AA____
18._SCA_5___
CCTT______CC__AAGG____AA____
19._SCA_5___
CCTT______CC__AAGG____AA____
20._SCA_5___
CCTT______CC__AAGG____AA____
21._SCA_5___
CCTT______CC__AAGG____AA____
22._SCA_5___
CCTT______CC__AAGG____AA____
23._SCA_5___
CCTT______CC__AAGG____AA____
24._SCA_5___
CCTT______CC__AAGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
1._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
2._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
3._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
4._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
5._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
6._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
7._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
8._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
9._SCA_5___
CCGGTTTTGG__AGCCCCAAAAGGTTTT
10._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
11._SCA_5___
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
12._SCA_5___
______TT__________________TT
13._SCA_5___
______TT__________________TT
14._SCA_5___
______TT__________________TT
15._SCA_5___
______TT__________________TT
16._SCA_5___
______TT__________________TT
17._SCA_5___
______TT__________________TT
18._SCA_5___
______TT__________________TT
19._SCA_5___
______TT__________________TT
20._SCA_5___
______TT__________________TT
21._SCA_5___
______TT__________________TT
22._SCA_5___
______TT__________________TT
23._SCA_5___
______TT__________________TT
24._SCA_5___
______TT__________________TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTGGCCCCTTCCCGGGACGGGGGGAA
1._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
2._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
3._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
4._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
5._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
6._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
7._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
8._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
9._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
10._SCA_5___
CC__GGCCCCTTCCCGGGACGGGGGGAA
11._SCA_5___
CCTTGGCCCCTTCCCGGGACGGGGGGAA
12._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
13._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
14._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
15._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
16._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
17._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
18._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
19._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
20._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
21._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
22._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
23._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
24._SCA_5___
CC____CC__TTCCCG__ACGGGGGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCAGCTCCGGCCCCAAAACCCCAACC
1._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
2._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
3._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
4._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
5._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
6._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
7._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
8._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
9._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
10._SCA_5___
CTCCAGCTCCGGCCCCAAAACCCCAACC
11._SCA_5___
CTCCAGCTCCGGCCCCAA__CCCCAACC
12._SCA_5___
____AGCT__________AACC______
13._SCA_5___
____AGCT__________AACC______
14._SCA_5___
____AGCT__________AACC______
15._SCA_5___
____AGCT__________AACC______
16._SCA_5___
____AGCT__________AACC______
17._SCA_5___
____AGCT__________AACC______
18._SCA_5___
____AGCT__________AACC______
19._SCA_5___
____AGCT__________AACC______
20._SCA_5___
____AGCT__________AACC______
21._SCA_5___
____AGCT__________AACC______
22._SCA_5___
____AGCT__________AACC______
23._SCA_5___
____AGCT____________CC______
24._SCA_5___
____GGCT__________AACC______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
1._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
2._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
3._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
4._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
5._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
6._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
7._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
8._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
9._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
10._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
11._SCA_5___
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
12._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
13._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
14._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
15._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
16._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
17._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
18._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
19._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
20._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
21._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
22._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
23._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X
24._SCA_5___
TTCCCC__GG__CTGTCT____X_XX_XX_X

Input profile: SCA_5 GC-01-092-5-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

1._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

3._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

4._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

8._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

9._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 13 > F
 Dapeng Zhang, 2016

13._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 4 > FP
 Dapeng Zhang, 2016

14._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 5 > FP
 Dapeng Zhang, 2016

15._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 9 > FP
 Dapeng Zhang, 2016

16._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 15
 Dapeng Zhang, 2016

17._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 14
 Dapeng Zhang, 2016

18._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 12
 Dapeng Zhang, 2016

19._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 11
 Dapeng Zhang, 2016

20._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 10
 Dapeng Zhang, 2016

21._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 6
 Dapeng Zhang, 2016

22._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 1
 Dapeng Zhang, 2016

23._SCA_5

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 8
 Dapeng Zhang, 2016

24._SCA_5

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A25 T2
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240