SNP Profiles of GU-123C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCAACC
1._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
2._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
3._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
4._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
5._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
6._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
7._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCAACC
8._GU_123_/C
AACCCC________CCCCGG__CC____
9._GU_123_/C
AACCCC________CCCCGG__CC____
10._GU_123_/C
AACCCC________CCCCGG__CC____
11._GU_123_/C
AACCCC________CCCCGG__CC____
12._GU_123_/C
AACCCC________CCCCGG__CC____
13._GU_123_/C
AACCCC________CCCCGG__CC____
14._GU_123_/C
AACCCC________CCCCGG__CC____
15._GU_123_/C
AACCCC________CCCCGG__CC____
16._GU_123_/C
AACCCC________CCCCGG__CC____
17._GC-01-95-5-12
AA__CCGGGG__GGGG__GGAAGGTTCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGCCGGCCAATTGGTTAACCGGAATT
1._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
2._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
3._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
4._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
5._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
6._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
7._GC-01-095-5-12
GGGGCCGGCCAATTGGTTAACCGGAATT
8._GU_123_/C
GG____GG________TTAA__GGAA__
9._GU_123_/C
GG____GG________TTAA__GGAA__
10._GU_123_/C
GG____GG________TTAA__GGAA__
11._GU_123_/C
GG____GG________TTAA__GGAA__
12._GU_123_/C
GG____GG________TTAA__GGAA__
13._GU_123_/C
GG____GG________TTAA__GGAA__
14._GU_123_/C
GG____GG________TTAA__GGAA__
15._GU_123_/C
GG____GG________TTAA__GGAA__
16._GU_123_/C
GG____GG________TTAA__GGAA__
17._GC-01-95-5-12
GGCC__GGGGAAAAGGTTAAGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCCCAATTGGGGGGCCAGCCGGTT
1._GC-01-095-5-12
TTGGCCCCAATTGGGGGGCCAGCCGGTT
2._GC-01-095-5-12
TTGGCCCCAATTGGGGGGCCAGCCGGTT
3._GC-01-095-5-12
TTGGCCCCAATTGGGGGGCCAGCCGGTT
4._GC-01-095-5-12
TTGGCCCCAATTGGGGGGCCAGCCGGTT
5._GC-01-095-5-12
TTGGCCCCAATTGGGGGGCCAGCCGGTT
6._GC-01-095-5-12
TTGGCCCCAATTGGGGGGCCAGCCGGTT
7._GC-01-095-5-12
__GGCCCCAATTGGGGGGCCAGCCGGTT
8._GU_123_/C
____CC__AATT____GG__________
9._GU_123_/C
____CC__AATT____GG__________
10._GU_123_/C
____CC__AATT____GG__________
11._GU_123_/C
____CC__AATT____GG__________
12._GU_123_/C
____CC__AATT____GG__________
13._GU_123_/C
____CC__AATT____GG__________
14._GU_123_/C
____CC__AATT____GG__________
15._GU_123_/C
____CC__AATT____GG__________
16._GU_123_/C
____CC__AATT____GG__________
17._GC-01-95-5-12
AAGGCCCCAAAACCCCGGGGAGGGCC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-01-095-5-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GU_123_/C
TT__________________TTCC____
9._GU_123_/C
TT__________________TTCC____
10._GU_123_/C
TT__________________TTCC____
11._GU_123_/C
TT__________________TTCC____
12._GU_123_/C
TT__________________TTCC____
13._GU_123_/C
TT__________________TTCC____
14._GU_123_/C
TT__________________TTCC____
15._GU_123_/C
TT__________________TTCC____
16._GU_123_/C
TT__________________TTCC____
17._GC-01-95-5-12
AA__GGAAGG__GGGGAAAAAAGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAA
1._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
2._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
3._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
4._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
5._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
6._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
7._GC-01-095-5-12
CCCCCCAAGGGGAAGGGGGGAACCCCAA
8._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
9._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
10._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
11._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
12._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
13._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
14._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
15._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
16._GU_123_/C
CC__CCAAGG__AAGGGGGG______AA
17._GC-01-95-5-12
GGGGGGAAGGGGAAGGCCCCAA______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAAGGCCCCGGAAGGCCTTAATTCTCC
1._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTTAATTCTCC
2._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTTAATTCTCC
3._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTTAATTCTCC
4._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTTAATTCTCC
5._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTTAATTCTCC
6._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTTAATTCTCC
7._GC-01-095-5-12
CCAAGGCCCCGGAAGGCCTT__TTCTCC
8._GU_123_/C
CC__________AAGG______TTCTCC
9._GU_123_/C
CC__________AAGG______TTCTCC
10._GU_123_/C
CC__________AAGG______TTCTCC
11._GU_123_/C
CC__________AAGG______TTCTCC
12._GU_123_/C
CC__________AAGG______TTCTCC
13._GU_123_/C
CC__________AAGG______TTCTCC
14._GU_123_/C
CC__________AAGG______TTCTCC
15._GU_123_/C
CC__________AAGG______TTCTCC
16._GU_123_/C
CC__________AAGG______TTCTCC
17._GC-01-95-5-12
GGAAGGCCCC__AACCGGTTAAAAAG__
 85 86 87 88 89 90 91 92       
_Input profile
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-095-5-12
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
9._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
10._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
11._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
12._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
13._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
14._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._GU_123_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._GC-01-95-5-12
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_123_/C GC-01-095-5-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

5._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._GU_123_/C GC-01-095-5-12

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

8._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 13 > FP4
 Dapeng Zhang, 2016

9._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 2
 Dapeng Zhang, 2016

10._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 3
 Dapeng Zhang, 2016

11._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 6
 Dapeng Zhang, 2016

12._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 9
 Dapeng Zhang, 2016

13._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 14
 Dapeng Zhang, 2016

14._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 1 > FP
 Dapeng Zhang, 2016

15._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 4 > FP3
 Dapeng Zhang, 2016

16._GU_123_/C

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 44
 Dapeng Zhang, 2016

17._GU_123_/C GC-01-95-5-12

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240