SNP Profiles of GU-133C   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCCCCCCCCGGTTTTAACC
1._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
2._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
3._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
4._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
5._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
6._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
7._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
8._GC-08-164-4-07
AACCACGGGG__CCCCCCGGTTTTAACC
9._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
10._GC-08-164-4-07
AA__ACGGGGCCCCCCCCGGTTTTAACC
11._RUQ_190
__CCAC____CC__CC____TT______
12._GU_133_/C
AACCAC________CCCCGG________
13._GU_133_/C
AACCAC________CCCCGG________
14._GU_133_/C
AACCAC________CCCCGG________
15._GU_133_/C
AACCAC________CCCCGG________
16._GU_133_/C
AACCAC________CCCCGG________
17._GU_133_/C
AACCAC________CCCCGG________
18._GU_133_/C
AACCAC________CCCCGG________
19._GU_133_/C
AACCAC________CCCCGG________
20._GU_133_/C
AACCAC________CCCCGG________
21._GU_133_/C
AACCAC________CCCCGG________
22._GU_133_/C
AA__AC________CCCCGG________
23._RUQ_190
AACCAC________CCCCGG________
24._RUQ_190
____AC____CC________________
25._RUQ_190
____AC________CC____________
26._GC-01-116-6-13
AA__ACGGGG__GGGG__GGAAAATTCC
27._MITC-000670
AA__ACGGGG__GGGG__GGAAAATTCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGGGCCGGAATTGGATAACCGGAATT
1._GC-01-116-6-13
__GGGGCCGGAATTGGATAACCGGAATT
2._GC-01-116-6-13
__GGGGCCGGAATTGGATAACCGGAATT
3._GC-01-116-6-13
__GGGGCCGGAATTGGATAACCGGAATT
4._GC-01-116-6-13
__GGGGCCGGAATTGGATAACCGGAATT
5._GC-08-164-4-07
__GGGGCCGGAATTGGATAACCGGAATT
6._GC-08-164-4-07
__GGGGCCGGAATTGGATAACCGGAATT
7._GC-08-164-4-07
__GGGGCCGGAATTGGATAACCGGAATT
8._GC-08-164-4-07
__GGGGCCGGAATTGGATAACCGGAATT
9._GC-08-164-4-07
__GGGGCCGGAATTGGATAACCGGAATT
10._GC-08-164-4-07
__GGGGCCGGAATTGGATAACCGGAATT
11._RUQ_190
______CC______GG__AACCGG____
12._GU_133_/C
__GG____GG______ATAA__GGAA__
13._GU_133_/C
__GG____GG______ATAA__GGAA__
14._GU_133_/C
__GG____GG______ATAA__GGAA__
15._GU_133_/C
__GG____GG______ATAA__GGAA__
16._GU_133_/C
__GG____GG______ATAA__GGAA__
17._GU_133_/C
__GG____GG______ATAA__GGAA__
18._GU_133_/C
__GG____GG______ATAA__GGAA__
19._GU_133_/C
__GG____GG______ATAA__GGAA__
20._GU_133_/C
__GG____GG______ATAA__GGAA__
21._GU_133_/C
__GG____GG______ATAA__GGAA__
22._GU_133_/C
__GG____GG______ATAA__GGAA__
23._RUQ_190
__GG____GG______ATAA__GGAA__
24._RUQ_190
__GGCC________________GG____
25._RUQ_190
GG____GG______GG__AACCCC____
26._GC-01-116-6-13
GGGGCC__GGGGAAGGATAAGGCCAAAA
27._MITC-000670
GGGGCC__GGGGAAGGATAAGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
1._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
2._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
3._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
4._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
5._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
6._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
7._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
8._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
9._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
10._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
11._RUQ_190
__GGCCCCGGTTGGCC____GGTT____
12._GU_133_/C
____CC__GGTTGG__________TT__
13._GU_133_/C
____CC__GGTTGG__________TT__
14._GU_133_/C
____CC__GGTTGG__________TT__
15._GU_133_/C
____CC__GGTTGG__________TT__
16._GU_133_/C
____CC__GGTTGG__________TT__
17._GU_133_/C
____CC__GGTTGG__________TT__
18._GU_133_/C
____CC__GGTTGG__________TT__
19._GU_133_/C
____CC__GGTTGG__________TT__
20._GU_133_/C
____CC__GGTTGG__________TT__
21._GU_133_/C
____CC__GGTTGG__________TT__
22._GU_133_/C
____CC__GGTTGG__________TT__
23._RUQ_190
____CC__GGGTGG__________TT__
24._RUQ_190
____CC__GG____CC____________
25._RUQ_190
__GGCC________CC______TT__AA
26._GC-01-116-6-13
AAGGCCCCGGAAGGGGGGGGCC__AA__
27._MITC-000670
AAGGCCCCGGAAGGGGGGGGCC__AA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAACCCCGGTTTTTTCCTTGGCCCCCC
1._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
2._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
3._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
4._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
5._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
6._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
7._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
8._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
9._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
10._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
11._RUQ_190
GG__________TTTT__TT__CCCCCC
12._GU_133_/C
______________TTCC____CC__CC
13._GU_133_/C
______________TTCC____CC__CC
14._GU_133_/C
______________TTCC____CC__CC
15._GU_133_/C
______________TTCC____CC__CC
16._GU_133_/C
______________TTCC____CC__CC
17._GU_133_/C
______________TTCC____CC__CC
18._GU_133_/C
______________TTCC____CC__CC
19._GU_133_/C
______________TTCC____CC__CC
20._GU_133_/C
______________TTCC____CC__CC
21._GU_133_/C
______________TTCC____CC__CC
22._GU_133_/C
______________TTCC____CC__CC
23._RUQ_190
______________TTCC____CC__CC
24._RUQ_190
GG__________________GG______
25._RUQ_190
______________TT______GGCC__
26._GC-01-116-6-13
GGAAGG__GGAAAAAAGGAAGGGGGGGG
27._MITC-000670
GGAAGG__GGAAAAAAGGAAGGGGGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGAAGGGGAACCCCGGCCACGGCC
1._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
2._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
3._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
4._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
5._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
6._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
7._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
8._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
9._GC-08-164-4-07
__GGGGAAGGGGAACCCCGGCCACGGCC
10._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
11._RUQ_190
AA__GGAAGGGGAA______________
12._GU_133_/C
AAGG__AAGGGG______GGCC______
13._GU_133_/C
AAGG__AAGGGG______GGCC______
14._GU_133_/C
AAGG__AAGGGG______GGCC______
15._GU_133_/C
AAGG__AAGGGG______GGCC______
16._GU_133_/C
AAGG__AAGGGG______GGCC______
17._GU_133_/C
AAGG__AAGGGG______GGCC______
18._GU_133_/C
AAGG__AAGGGG______GGCC______
19._GU_133_/C
AAGG__AAGGGG______GGCC______
20._GU_133_/C
AAGG__AAGGGG______GGCC______
21._GU_133_/C
__GG__AAGGGG______GGCC______
22._GU_133_/C
AAGG__AAGGGG______GGCC______
23._RUQ_190
AAGG__AAGGGG______AACC______
24._RUQ_190
______AA__GGAA____AA________
25._RUQ_190
AA__GGAA________CC__________
26._GC-01-116-6-13
AAGGGGAACCCCAA______GGACGGCC
27._MITC-000670
AAGGGGAACCCCAA______GGACGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGAACGCCTTAACCCCCCCCGGCCCC
1._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
2._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
3._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
4._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
5._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
6._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
7._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
8._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
9._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
10._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
11._RUQ_190
____AACG____AACC______GGCCCC
12._GU_133_/C
____AACG______CCCCCC__GG__CC
13._GU_133_/C
____AACG______CCCCCC__GG__CC
14._GU_133_/C
____AACG______CCCCCC__GG__CC
15._GU_133_/C
____AACG______CCCCCC__GG__CC
16._GU_133_/C
____AACG______CCCCCC__GG__CC
17._GU_133_/C
____AACG______CCCCCC__GG__CC
18._GU_133_/C
____AACG______CCCCCC__GG__CC
19._GU_133_/C
____AACG______CCCCCC__GG__CC
20._GU_133_/C
____AACG______CCCCCC__GG__CC
21._GU_133_/C
____AACG______CCCCCC__GG__CC
22._GU_133_/C
____AACG______CCCCCC__GG__CC
23._RUQ_190
____AACG______CCCCCC__GG__CC
24._RUQ_190
____AACG____AA____CC____CC__
25._RUQ_190
______CG________CC__________
26._GC-01-116-6-13
CC__AACGGGTTAAGGGG__GG____GG
27._MITC-000670
CC__AACGGGTTAAGGGG__GG____GG
 85 86             
_Input profile
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._MITC-000670
TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C GC-01-116-6-13

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

identical
85 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_133_/C GC-08-164-4-07

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._GU_133_/C RUQ_190

identical
39 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

14._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

16._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

17._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

18._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

19._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

20._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

21._GU_133_/C

identical
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

22._GU_133_/C

identical
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

95.7 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

89.5 %
19 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

25._GU_133_/C RUQ_190

81.8 %
22 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

50 %
72 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP1484
36TcSNP602 37TcSNP561 38TcSNP894 39TcSNP1063 40TcSNP1126
41TcSNP1270 42TcSNP606 43TcSNP329 44TcSNP689 45TcSNP944
46TcSNP1242 47TcSNP547 48TcSNP776 49TcSNP1309 50TcSNP151
51TcSNP1520 52TcSNP799 53TcSNP899 54TcSNP226 55TcSNP1439
56TcSNP1442 57TcSNP193 58TcSNP25 59TcSNP364 60TcSNP144
61TcSNP560 62TcSNP723 63TcSNP731 64TcSNP701 65TcSNP1041
66TcSNP645 67TcSNP917 68Tcm003s01336581 69Tcm003s07402719 70Tcm001s00947643
71Tcm006s26664133 72Tcm002s20575712 73TcSNP529 74TcSNP1458 75TcSNP60
76TcSNP430 77TcSNP823 78TcSNP619 79TcSNP994 80TcSNP1144
81TcSNP1156 82TcSNP469 83TcSNP999 84TcSNP242 85TcSNP154
86TcSNP240