SNP Profiles of SCA 11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
1._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
2._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
3._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
4._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
5._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
6._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
7._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
8._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
9._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
10._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
11._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
12._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
13._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
14._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTT__TT
15._GC-08-157-3-56
AT__CCCCAGAGTTTTCCTTAGTTTTTT
16._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
17._GC-08-157-3-56
ATCCCCCCAG__TTTTCCTTAGTTTTTT
18._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
19._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
20._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
21._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
22._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTT__TTTTTT
23._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
24._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
25._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
26._SCA_11
ATCCCCCC________CCTTAG__TT__
27._SCA_11
ATCCCCCC________CCTTAG__TT__
28._SCA_11
ATCCCCCC________CCTTAG__TT__
29._SCA_11
ATCCCCCC________CCTTAG__TT__
30._SCA_11
ATCCCCCC________CCTTAG__TT__
31._SCA_11
ATCCCCCC________CCTTAG__TT__
32._SCA_11
ATCCCCCC________CCTTAG__TT__
33._SCA_11
ATCCCCCC________CCTTAG__TT__
34._SCA_11
ATCCCCCC________CCTTAG__TT__
35._SCA_11
ATCCCCCC________CCTTAG__TT__
36._SCA_11
ATCCCCCC________CCTTAG__TT__
37._SCA_11
ATCCCCCC________CCTTAG__TT__
38._SCA_11
ATCCCCCC________CCTTAG__TT__
39._SCA_11
ATCCCCCC________CCTTAG__TT__
40._SCA_11
ATCCCCCC________CCTTAG__TT__
41._SCA_11
ATCCCCCC________CCTTAG__TT__
42._SCA_11
ATCCCCCC________CCTTAG__TT__
43._SCA_11
ATCCCCCC________CCTTAG__TT__
44._SCA_11
ATCCCCCC________CCTTAG__TT__
45._SCA_11
ATCCCCCC________CCTTAG__TT__
46._SCA_11
ATCCCCCC________CCTT____TT__
47._SCA_11
ATCCCCCC________CCTTAG__TT__
48._SCA_11
ATCCCCCC________CCTTAG______
49._SCA_11
AT__CCCC________CCTTAG__TT__
50._SCA_11
ATCCCCCC________CCTTAG__TT__
51._SCA_11
ATCCCCCC________CCTTAG__TT__
52._RUQ_1686
______CC____CT______________
53._RUQ_374
____CCCC____CC__CC____TTTT__
54._RUQ_374
AACCCCCC________CCCTAA__TT__
55._SCA_11
AACCCCCC________CCTTAA__TT__
56._RUQ_1686
ATCC__CCAGAG__AAGG__AGAAAAAA
57._RUQ_1686
______AA________CC______CT__
58._MITC-000057
AACC__CCGGAA__AAGG__AAAAAAAA
59._SCA_11
AAAATTCC________CTTTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
13._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
14._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
15._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
16._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
17._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
18._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
19._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
20._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
21._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
22._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
23._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
24._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
25._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
26._SCA_11
______GG____CC________AAAA__
27._SCA_11
______GG____CC________AAAA__
28._SCA_11
______GG____CC________AAAA__
29._SCA_11
______GG____CC________AAAA__
30._SCA_11
______GG____CC________AAAA__
31._SCA_11
______GG____CC________AAAA__
32._SCA_11
______GG____CC________AAAA__
33._SCA_11
______GG____CC________AAAA__
34._SCA_11
______GG____CC________AAAA__
35._SCA_11
______GG____CC________AAAA__
36._SCA_11
______GG____CC________AAAA__
37._SCA_11
______GG____CC________AAAA__
38._SCA_11
______GG____CC________AAAA__
39._SCA_11
______GG____CC________AAAA__
40._SCA_11
______GG____CC________AAAA__
41._SCA_11
______GG____CC________AAAA__
42._SCA_11
______GG____CC________AAAA__
43._SCA_11
______GG____CC________AAAA__
44._SCA_11
______GG____CC________AAAA__
45._SCA_11
______GG____CC________AAAA__
46._SCA_11
______GG____CC________AAAA__
47._SCA_11
______GG____CC________AAAA__
48._SCA_11
______GG____CC________AAAA__
49._SCA_11
______GG____CC________AAAA__
50._SCA_11
______GG____CC________AAAA__
51._SCA_11
______GG____CC________AAAA__
52._RUQ_1686
______GGCC__________________
53._RUQ_374
__________GG________GG__AAGG
54._RUQ_374
______GG____CC________AAAA__
55._SCA_11
______GG____CC________AAAA__
56._RUQ_1686
ATAAAAGGGG__CCGGAAAGGGAAAACC
57._RUQ_1686
____GG____GG__CT____GG__ATCC
58._MITC-000057
AAACAAGGGG__CCGGAGGGGGAAAA__
59._SCA_11
______AA____GG________TTAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
13._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
14._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
15._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
16._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
17._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
18._GC-08-157-3-56
CCTTTTTTGGCG__AAGGTTTTAGCCGG
19._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCC__
20._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
21._GC-08-157-3-56
__TTTTTTGGCGCCAAGGTTTTAGCCGG
22._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
23._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
24._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTT__AGCCGG
25._GC-08-157-3-56
__TTTTTTGGCGCCAAGGTTTTAGCCGG
26._SCA_11
CCTT______CG__AAGG____AG____
27._SCA_11
CCTT______CG__AAGG____AG____
28._SCA_11
CCTT______CG__AAGG____AG____
29._SCA_11
CCTT______CG__AAGG____AG____
30._SCA_11
CCTT______CG__AAGG____AG____
31._SCA_11
CCTT______CG__AAGG____AG____
32._SCA_11
CCTT______CG__AAGG____AG____
33._SCA_11
CCTT______CG__AAGG____AG____
34._SCA_11
CCTT______CG__AAGG____AG____
35._SCA_11
CCTT______CG__AAGG____AG____
36._SCA_11
CCTT______CG__AAGG____AG____
37._SCA_11
CCTT______CG__AAGG____AG____
38._SCA_11
CCTT______CG__AAGG____AG____
39._SCA_11
CCTT______CG__AAGG____AG____
40._SCA_11
CCTT______CG__AAGG____AG____
41._SCA_11
CCTT______CG__AAGG____AG____
42._SCA_11
CCTT______CG__AAGG____AG____
43._SCA_11
CCTT______CG__AAGG____AG____
44._SCA_11
CCTT______CG__AAGG____AG____
45._SCA_11
CCTT______CG__AAGG____AG____
46._SCA_11
CCTT______CG__AAGG____AG____
47._SCA_11
__TT______CG__AAGG____AG____
48._SCA_11
CCTT______CG__AAGG____AG____
49._SCA_11
CCTT______CG__AAGG____AG____
50._SCA_11
CCTT______CG__AAGG____AG____
51._SCA_11
__TT______CG__AAGG____AG____
52._RUQ_1686
CC________CG__AA________CC__
53._RUQ_374
CC______AGCCCCAAGG____AACC__
54._RUQ_374
CCTT______CC__AAGG____AG____
55._SCA_11
CCTT______CC__AAGG____AA____
56._RUQ_1686
GGTTAAAAGGCGCCAACCAAAAAGGGGG
57._RUQ_1686
GG______GGGG________TT__CC__
58._MITC-000057
GGTTAAAAAGCCCCAACCAAAAAAGGGG
59._SCA_11
CGAA______CC__AATT____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAGAACCCCAAAAGGTTCC
1._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
2._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
3._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
4._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
5._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
6._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
7._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
8._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
9._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
10._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
11._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
12._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
13._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
14._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
15._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
16._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
17._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
18._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
19._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
20._GC-08-157-3-56
CCGGTTTTGGAG__CCCCAAAAGGTTCC
21._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
22._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
23._GC-08-157-3-56
CCGGTTTTGGAG__CCCCAAAAGGTTCC
24._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
25._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
26._SCA_11
______TT________________TTCC
27._SCA_11
______TT________________TTCC
28._SCA_11
______TT________________TTCC
29._SCA_11
______TT________________TTCC
30._SCA_11
______TT________________TTCC
31._SCA_11
______TT________________TTCC
32._SCA_11
______TT________________TTCC
33._SCA_11
______TT________________TTCC
34._SCA_11
______TT________________TTCC
35._SCA_11
______TT________________TTCC
36._SCA_11
______TT________________TTCC
37._SCA_11
______TT________________TTCC
38._SCA_11
______TT________________TTCC
39._SCA_11
______TT________________TTCC
40._SCA_11
______TT________________TTCC
41._SCA_11
______TT________________TTCC
42._SCA_11
______TT________________TTCC
43._SCA_11
______TT________________TTCC
44._SCA_11
______TT________________TTCC
45._SCA_11
______TT________________TTCC
46._SCA_11
______TT________________TTCC
47._SCA_11
______TT________________TTCC
48._SCA_11
______TT________________TTCC
49._SCA_11
______TT________________TTCC
50._SCA_11
______TT________________TTCC
51._SCA_11
______TT________________TTCC
52._RUQ_1686
__________AG________________
53._RUQ_374
__GGTT____AA____________TT__
54._RUQ_374
______TT________________TTCC
55._SCA_11
______TT________________TTCC
56._RUQ_1686
GGCC__AA__AGAAGG__AAAACCAAGG
57._RUQ_1686
____TT__AA______________CC__
58._MITC-000057
GGCC__AA__AAAAGG__AAAACCAAGG
59._SCA_11
______CC________________CTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTCCCCTTCCCGGGAAAAGGGGAACTCC
1._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
2._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
3._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
4._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
5._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
6._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
7._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
8._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
9._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
10._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
11._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
12._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
13._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
14._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
15._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
16._GC-08-157-3-56
TTCCCCTTCCCGGGAAAA__GGAACTCC
17._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
18._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
19._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
20._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
21._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
22._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
23._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
24._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
25._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
26._SCA_11
__CC__TTCCCG__AAAAGGGG______
27._SCA_11
__CC__TTCCCG__AAAAGGGG______
28._SCA_11
__CC__TTCCCG__AAAAGGGG______
29._SCA_11
__CC__TTCCCG__AAAAGGGG______
30._SCA_11
__CC__TTCCCG__AAAAGGGG______
31._SCA_11
__CC__TTCCCG__AAAAGGGG______
32._SCA_11
__CC__TTCCCG__AAAAGGGG______
33._SCA_11
__CC__TTCCCG__AAAAGGGG______
34._SCA_11
__CC__TTCCCG__AAAAGGGG______
35._SCA_11
__CC__TTCCCG__AAAAGGGG______
36._SCA_11
__CC__TTCCCG__AAAAGGGG______
37._SCA_11
__CC__TTCCCG__AAAAGGGG______
38._SCA_11
__CC__TTCCCG__AAAAGGGG______
39._SCA_11
__CC__TTCCCG__AAAAGGGG______
40._SCA_11
__CC__TTCCCG__AAAAGGGG______
41._SCA_11
__CC__TTCCCG__AAAAGGGG______
42._SCA_11
__CC__TTCCCG__AAAAGGGG______
43._SCA_11
__CC__TTCCCG__AAAAGGGG______
44._SCA_11
__CC__TTCCCG__AAAAGGGG______
45._SCA_11
__CC__TTCCCG__AAAAGGGG______
46._SCA_11
__CC__TTCCCG__AAAAGGGG______
47._SCA_11
__CC__TTCCCG__AAAAGGGG______
48._SCA_11
__CC__TTCCCG__AAAAGGGG______
49._SCA_11
__CC__TTCCCG__AAAAGGGG______
50._SCA_11
__CC__TTCCCG__AAAA__GG______
51._SCA_11
__CC__TTCCCG__AAAAGGGG______
52._RUQ_1686
______________AAAA__GGAA____
53._RUQ_374
TTCGCCTTCC__GGCCAGGGGGAA____
54._RUQ_374
__CG__TTCCCG__ACAGGGGG______
55._SCA_11
__CG__TTCCCG__ACAGGGGG______
56._RUQ_1686
AAGGGGAACCCGGGAAAACCCCAA____
57._RUQ_1686
__CGCC__AA__GGACAG________CG
58._MITC-000057
AACGGGAACCCGGGACAGCCCCAA____
59._SCA_11
__CC__CTACGG__CCAATTGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTCCGGCCCCAAAACCCCAACCTTCC
1._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
2._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
3._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
4._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
5._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
6._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
7._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
8._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
9._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
10._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
11._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
12._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
13._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
14._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
15._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
16._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
17._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
18._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
19._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
20._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
21._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
22._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
23._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
24._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
25._GC-08-157-3-56
AA__CCGGCCCCAAAACCCCAACCTTCC
26._SCA_11
AACT__________AACC______TTCC
27._SCA_11
AACT__________AACC______TTCC
28._SCA_11
AACT__________AACC______TTCC
29._SCA_11
AACT__________AACC______TTCC
30._SCA_11
AACT__________AACC______TTCC
31._SCA_11
AACT__________AACC______TTCC
32._SCA_11
AACT__________AACC______TTCC
33._SCA_11
AACT__________AACC______TTCC
34._SCA_11
AACT__________AACC______TTCC
35._SCA_11
AACT__________AACC______TTCC
36._SCA_11
AACT__________AACC______TTCC
37._SCA_11
AACT__________AACC______TTCC
38._SCA_11
AACT__________AACC______TTCC
39._SCA_11
AACT__________AACC______TTCC
40._SCA_11
AACT__________AACC______TTCC
41._SCA_11
AACT__________AACC______TTCC
42._SCA_11
AACT__________AACC______TTCC
43._SCA_11
AACT__________AACC______TTCC
44._SCA_11
AACT__________AACC______TTCC
45._SCA_11
AACT__________AACC______TTCC
46._SCA_11
AACT__________AACC______TTCC
47._SCA_11
AACT__________AACC______TTCC
48._SCA_11
AACT__________AACC______TTCC
49._SCA_11
AACT__________AACC______TTCC
50._SCA_11
AACT__________AACC______TTCC
51._SCA_11
AA____________AACC______TTCC
52._RUQ_1686
AG____________AACC____CC____
53._RUQ_374
______________AACC____CCTT__
54._RUQ_374
GGCC__________AACC______TTCC
55._SCA_11
GGCC__________AACC______TTCC
56._RUQ_1686
__AGCCGGCCCC__AAGGGGAACCAAGG
57._RUQ_1686
________________GG________CT
58._MITC-000057
__GGCCGGCCCC__AAGGGGAACCAAGG
59._SCA_11
AATT__________CCGG______CCCT
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
1._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
2._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
3._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
4._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
5._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
6._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
7._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
8._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
9._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
10._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
11._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
12._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
13._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
14._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
15._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
16._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
17._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
18._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
19._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
20._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
21._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
22._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
23._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
24._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
25._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
26._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
27._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
28._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
29._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
30._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
31._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
32._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
33._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
34._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
35._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
36._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
37._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
38._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
39._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
40._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
41._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
42._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
43._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
44._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
45._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
46._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
47._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
48._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
49._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
50._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
51._SCA_11
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
52._RUQ_1686
CC____CC__GG______X_XX_XX_XX_XX_X
53._RUQ_374
____GGCCCTGT______X_XX_XX_XX_XX_X
54._RUQ_374
CC__GG__CTGTCT____X_XX_XX_XX_XX_X
55._SCA_11
CC__GG__CTGTCT____X_XX_XX_XX_XX_X
56._RUQ_1686
__GG____AACCGGAAGGX_XX_XX_XX_XX_X
57._RUQ_1686
__________________X_XX_XX_XX_XX_X
58._MITC-000057
__GG____AGACAGAAGGX_XX_XX_XX_XX_X
59._SCA_11
TT__AG__CTGGTT____X_XX_XX_XX_XX_X

Input profile: SCA_11 GC-01-117-6-14

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

14._SCA_11 GC-01-117-6-14

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

24._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
91 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_1686

95 %
20 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

53._SCA_11 RUQ_374

84.1 %
41 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

54._SCA_11 RUQ_374

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

55._SCA_11

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

56._SCA_11 RUQ_1686

50.6 %
79 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

57._SCA_11 RUQ_1686

50 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

58._SCA_11 MITC-000057

43.6 %
78 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

59._SCA_11

40 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240