SNP Profiles of CRU 156 (MIS_TTOICGT_GU 175/P)   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCACGGAGCCCCCTCCGGCTCCCC
1._CRU_156___
AAAACCACGGAGCCCCCTCCGGCTCCCC
2._CRU_156___
AAAACCACGGAGCCCCCTCCGGCTCCCC
3._CRU_156___
AAAACCACGGAGCCCCCTCCGGCTCCCC
4._CRU_156___
AAAACCACGGAGCCCCCTCCGGCTCCCC
5._CRU_156___
AAAACCAC________CTCCGG__CC__
6._CRU_156___
AAAACCAC________CTCCGG__CC__
7._CRU_156___
AAAACCAC________CTCCGG__CC__
8._CRU_156___
AAAACCAC________CTCCGG__CC__
9._CRU_156___
AAAACCAC________CTCCGG__CC__
10._CRU_156___
AAAACTAC________CTCCGG__CT__
11._CRU_156___
______CC____CC______________
12._CRU_156___
AACCCCCC________CCCCGG__CC__
13._CRU_156___
____CCCC____CC__CC____TTCC__
14._CRU_156___
AACC__CCGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGGGCCGGCTAGTTGGATATCGCC
1._CRU_156___
AACCAGGGCCGGCTAGTTGGATATCGCC
2._CRU_156___
AACCAGGGCCGGCTAGTTGGATATCGCC
3._CRU_156___
AACCAGGGCCGGCTAGTTGGATATCGCC
4._CRU_156___
AACCAGGGCCGGCTAGTTGGATATCGCC
5._CRU_156___
____AG____GG________ATAT__CC
6._CRU_156___
____AG____GG________ATAT__CC
7._CRU_156___
____AG____GG________ATAT__CC
8._CRU_156___
____AG____GG________ATAT__CC
9._CRU_156___
____AG____GG________ATAT__CC
10._CRU_156___
____GG____GG________TTAA__CC
11._CRU_156___
____AATT__________________GG
12._CRU_156___
____GG____GG________TTAA__GG
13._CRU_156___
________CC________GG__AACCGG
14._CRU_156___
TTCCGGCC__GGAAAAAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACTGGAGCCCCAAGTGGTTAACCGGCC
1._CRU_156___
AACTGGAGCCCCAAGTGGTTAACCGGCC
2._CRU_156___
AACTGGAGCCCCAAGTGGTTAACCGGCC
3._CRU_156___
AACTGGAGCCCCAAGTGGTTAACCGGCC
4._CRU_156___
AACTGGAGCCCCAAGTGGTTAACCGGCC
5._CRU_156___
AA______CC__AAGT____AA______
6._CRU_156___
AA______CC__AAGT____AA______
7._CRU_156___
AA______CC__AAGT____AA______
8._CRU_156___
AA______CC__AAGT____AA______
9._CRU_156___
AA______CC__AAGT____AA______
10._CRU_156___
AA______GG__AAGT____GG______
11._CRU_156___
________CC__AG________CC____
12._CRU_156___
AA______CC__AGGT____GG______
13._CRU_156___
______GGCCCCAATT____GGCC____
14._CRU_156___
AAAAAAGGCCCCAAAACCCCGGGGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCCGGAGAGCTACGGGGGTTTCTCC
1._CRU_156___
GTATCCGGAGAGCTACGGGGGTTTCTCC
2._CRU_156___
GTATCCGGAGAGCTACGGGGGTTTCTCC
3._CRU_156___
GTATCCGGAGAGCTACGGGGGTTTCTCC
4._CRU_156___
GTATCCGGAGAGCTACGGGGGTTTCTCC
5._CRU_156___
____CC__________________CTCC
6._CRU_156___
____CC__________________CTCC
7._CRU_156___
____CC__________________CTCC
8._CRU_156___
____CC__________________CTCC
9._CRU_156___
____CC__________________CTCC
10._CRU_156___
____CT__________________CTCC
11._CRU_156___
________AG__________________
12._CRU_156___
____TT__________________TTCC
13._CRU_156___
GGTT____GG____________TTTT__
14._CRU_156___
CC__AA__GGAAGG__GGGGAAAAAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTGGGGCCCTACGGAGAAAGGTGGGGTT
1._CRU_156___
GTGGGGCCCTACGGAGAAAGGTGGGGTT
2._CRU_156___
GTGGGGCCCTACGGAGAAAGGTGGGGTT
3._CRU_156___
GTGGGGCCCTACGGAGAAAGGTGGGGTT
4._CRU_156___
GTGGGGCCCTACGGAGAAAGGTGGGGTT
5._CRU_156___
____GG__CTACGG__AAAGGTGG____
6._CRU_156___
____GG__CTACGG__AAAGGTGG____
7._CRU_156___
____GG__CTACGG__AAAGGTGG____
8._CRU_156___
____GG__CTACGG__AAAGGTGG____
9._CRU_156___
____GG__CTACGG__AAAGGTGG____
10._CRU_156___
____GG__CTCCGG__ACAAGGGG____
11._CRU_156___
__AG____________CCAG__GTGG__
12._CRU_156___
____CC__CCAAGG__AAGGGGGG____
13._CRU_156___
TT__CCCCCCAA__GGAAGGGGGGAA__
14._CRU_156___
AAGGGGGGGGAAGGGGAAGGCCCCAA__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAGTTCCAACCCCAGCCCGCCAAACCT
1._CRU_156___
CGAGTTCCAACCCCAGCCCGCCAAACCT
2._CRU_156___
CGAGTTCCAACCCCAGCCCGCCAAACCT
3._CRU_156___
CGAGTTCCAACCCCAGCCCGCCAAACCT
4._CRU_156___
CGAGTTCCAACCCCAGCCCGCCAAACCT
5._CRU_156___
__AGTT__________CCCG______CT
6._CRU_156___
__AGTT__________CCCG______CT
7._CRU_156___
__AGTT__________CCCG______CT
8._CRU_156___
__AGTT__________CCCG______CT
9._CRU_156___
__AGTT__________CCCG______CT
10._CRU_156___
__AGCT__________ACCG________
11._CRU_156___
__AA____________CCCG____CC__
12._CRU_156___
__AACC__________AAGG______CC
13._CRU_156___
________________AAGG____AACC
14._CRU_156___
____GGACAGCCCC__AACCGGTTAAGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCTTAATTCTGTTTTTGGX_XX_XX_XX_X
1._CRU_156___
CTCCTTAATTCTGTTTTTGGX_XX_XX_XX_X
2._CRU_156___
CTCCTTAATTCTGTTTTTGGX_XX_XX_XX_X
3._CRU_156___
CTCCTTAATTCTGTTTTTGGX_XX_XX_XX_X
4._CRU_156___
CTCCTTAATTCTGTTTTTGGX_XX_XX_XX_X
5._CRU_156___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
6._CRU_156___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
7._CRU_156___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
8._CRU_156___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
9._CRU_156___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
10._CRU_156___
CT____AA__CTGTCT____X_XX_XX_XX_X
11._CRU_156___
__TT____TT__GT______X_XX_XX_XX_X
12._CRU_156___
CCCC__AG__CCTTTT____X_XX_XX_XX_X
13._CRU_156___
______AGCCCCTT______X_XX_XX_XX_X
14._CRU_156___
GG__GG____GGAAAATTGGX_XX_XX_XX_X

Input profile: CRU_156 GC-01-131-7-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._CRU_156 GC-01-131-7-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._CRU_156 GC-01-131-7-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._CRU_156 GC-01-131-7-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CRU_156 GC-01-131-7-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 6
 Dapeng Zhang, 2016

6._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 5
 Dapeng Zhang, 2016

7._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 3
 Dapeng Zhang, 2016

8._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 2
 Dapeng Zhang, 2016

9._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 1
 Dapeng Zhang, 2016

10._CRU_156

77.6 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y1
 Dapeng Zhang, 2016

11._CRU_156 RUQ_880

64.3 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

12._CRU_156 RUQ_880

60 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._CRU_156 RUQ_880

58.3 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._CRU_156 RUQ_880

37.5 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240