SNP Profiles of GU 125 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA	CC
1._GC-01-138-7-17	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA	CC
2._GC-01-138-7-17	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA	CC
3._GC-01-138-7-17	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA	CC
4._GC-01-138-7-17	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA	CC
5._GC-01-138-7-17	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	__	CC
6._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
7._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
8._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
9._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
10._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
11._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
12._GU_125_/C	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
13._RUQ_188	CC	AC	__	__	CC	__	CC	__	__	TT	CC	__	__	__
14._RUQ_188	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
15._RUQ_188	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__	__	__
16._RUQ_188	__	AC	__	__	CC	__	__	__	__	__	__	__	__	__
17._GC-01-138-7-17	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA	TT	CC
18._RUQ_188	__	AC	GG	GG	__	GG	GG	__	GG	AA	GG	AA	TT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT
1._GC-01-138-7-17	GG	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT
2._GC-01-138-7-17	GG	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT
3._GC-01-138-7-17	GG	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT
4._GC-01-138-7-17	GG	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT
5._GC-01-138-7-17	GG	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT
6._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
7._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
8._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
9._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
10._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
11._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
12._GU_125_/C	GG	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__
13._RUQ_188	__	__	CC	__	__	__	__	GG	__	AA	CC	GG	__	__
14._RUQ_188	GG	__	__	GG	__	__	__	__	AT	AA	__	GG	AA	__
15._RUQ_188	GG	__	__	GG	__	__	__	__	AT	AA	__	GG	AA	__
16._RUQ_188	GG	CT	__	__	__	__	__	__	__	__	__	GG	__	__
17._GC-01-138-7-17	GG	CC	__	GG	AA	AA	AA	GG	AA	AA	GG	CC	AA	AA
18._RUQ_188	GG	CC	__	GG	AG	GG	AA	GG	AT	AA	GG	CC	AA	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	CC	CC	GG	TT	GG	GG	GG	CC	GG	CC	GG	TT
1._GC-01-138-7-17	TT	GG	CC	CC	GG	TT	GG	GG	GG	CC	GG	CC	GG	TT
2._GC-01-138-7-17	TT	GG	CC	CC	GG	TT	GG	GG	GG	CC	GG	CC	GG	TT
3._GC-01-138-7-17	TT	GG	CC	CC	GG	TT	GG	GG	GG	CC	GG	CC	GG	TT
4._GC-01-138-7-17	TT	GG	CC	CC	GG	TT	GG	GG	GG	CC	GG	CC	GG	TT
5._GC-01-138-7-17	TT	GG	CC	CC	GG	TT	GG	GG	GG	CC	GG	CC	GG	TT
6._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
7._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
8._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
9._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
10._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
11._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
12._GU_125_/C	__	__	CC	__	GG	TT	__	__	GG	__	__	__	__	__
13._RUQ_188	__	GG	CC	CC	AG	TT	__	__	GG	CC	__	__	GG	TT
14._RUQ_188	__	__	CC	__	AG	TT	__	__	GG	__	__	__	__	__
15._RUQ_188	__	__	CC	__	AG	GT	__	__	GG	__	__	__	__	__
16._RUQ_188	__	__	CC	__	AG	__	__	__	__	CC	__	__	__	__
17._GC-01-138-7-17	AA	GG	CC	CC	GG	AA	CC	CC	GG	GG	GG	GG	CC	__
18._RUQ_188	AA	GG	CC	CC	AG	AA	CC	CC	GG	GG	GG	GG	CC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
1._GC-01-138-7-17	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
2._GC-01-138-7-17	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
3._GC-01-138-7-17	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
4._GC-01-138-7-17	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
5._GC-01-138-7-17	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
6._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
7._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
8._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
9._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
10._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
11._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
12._GU_125_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
13._RUQ_188	__	__	GG	__	__	__	__	__	__	TT	TT	__	TT	__
14._RUQ_188	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
15._RUQ_188	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
16._RUQ_188	__	__	GG	__	__	__	__	__	__	__	__	__	__	GG
17._GC-01-138-7-17	AA	__	GG	AA	GG	__	GG	GG	AA	AA	AA	GG	AA	GG
18._RUQ_188	AA	__	GG	AA	GG	__	GG	GG	AA	AA	AA	GG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
1._GC-01-138-7-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
2._GC-01-138-7-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
3._GC-01-138-7-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
4._GC-01-138-7-17	CC	CC	CC	AA	GG	GG	AA	GG	__	GG	AA	CC	CC	AA
5._GC-01-138-7-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
6._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
7._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
8._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
9._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
10._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
11._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
12._GU_125_/C	CC	__	CC	AA	GG	__	AA	GG	__	GG	__	__	__	AA
13._RUQ_188	CC	CC	CC	AA	__	GG	AA	GG	GG	GG	AA	__	__	__
14._RUQ_188	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AG
15._RUQ_188	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AG
16._RUQ_188	__	__	__	__	__	__	AA	GG	__	GG	AA	__	__	AG
17._GC-01-138-7-17	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	__	__	__
18._RUQ_188	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	AG	CC	CC	GG	AA	CC	CC	TT	AA	CC	CC	CC
1._GC-01-138-7-17	CC	AA	AG	CC	CC	GG	AA	CC	CC	TT	AA	CC	CC	CC
2._GC-01-138-7-17	CC	AA	AG	CC	CC	GG	AA	CC	CC	TT	AA	CC	CC	CC
3._GC-01-138-7-17	CC	AA	AG	CC	CC	GG	AA	CC	CC	TT	AA	CC	CC	CC
4._GC-01-138-7-17	CC	AA	AG	CC	CC	GG	AA	CC	CC	TT	AA	CC	CC	CC
5._GC-01-138-7-17	CC	AA	AG	CC	CC	GG	AA	CC	CC	TT	AA	CC	CC	CC
6._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
7._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
8._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
9._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
10._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
11._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
12._GU_125_/C	CC	__	__	__	__	__	AA	CC	__	__	__	CC	CC	CC
13._RUQ_188	__	__	__	__	__	__	AA	CG	__	__	AA	CC	__	__
14._RUQ_188	CC	__	__	__	__	__	AA	CG	__	__	__	CC	CC	CC
15._RUQ_188	CC	__	__	__	__	__	AA	CG	__	__	__	CC	CC	CC
16._RUQ_188	__	__	__	__	__	__	AA	CG	__	__	AA	__	__	CC
17._GC-01-138-7-17	GG	AA	AG	CC	CC	__	AA	GG	GG	TT	AA	GG	GG	__
18._RUQ_188	GG	AC	AA	CC	CC	__	AA	CG	GG	TT	AA	GG	GG	__

	85	86	87	88	89	90	91	92
_Input profile	CC	GG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
7._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
8._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
9._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
10._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
11._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
12._GU_125_/C	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_188	__	GG	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_188	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
15._RUQ_188	__	GG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_188	__	__	CC	__	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-138-7-17	GG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
18._RUQ_188	GG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_125_/C GC-01-138-7-17

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

1._GU_125_/C GC-01-138-7-17

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

2._GU_125_/C GC-01-138-7-17

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

3._GU_125_/C GC-01-138-7-17

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._GU_125_/C GC-01-138-7-17

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._GU_125_/C GC-01-138-7-17

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

6._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

7._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

8._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

9._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

10._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

11._GU_125_/C

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

12._GU_125_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

13._GU_125_/C RUQ_188

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

85.7 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.998

17._GU_125_/C GC-01-138-7-17

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

18._GU_125_/C RUQ_188

43.6 %
78 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP534	2	TcSNP591	3	TcSNP42	4	TcSNP418	5	TcSNP702
6	TcSNP1096	7	TcSNP1060	8	TcSNP1165	9	TcSNP429	10	TcSNP75
11	TcSNP891	12	TcSNP122	13	TcSNP316	14	TcSNP521	15	TcSNP1062
16	TcSNP836	17	TcSNP878	18	TcSNP929	19	TcSNP413	20	TcSNP653
21	TcSNP1149	22	TcSNP174	23	TcSNP32	24	TcSNP372	25	TcSNP448
26	TcSNP872	27	TcSNP953	28	TcSNP1034	29	TcSNP1175	30	TcSNP1111
31	TcSNP577	32	TcSNP90	33	TcSNP998	34	TcSNP150	35	TcSNP28
36	TcSNP751	37	TcSNP1484	38	TcSNP602	39	TcSNP561	40	TcSNP894
41	TcSNP1063	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240