SNP Profiles of GU 168 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._GU_168_/H
AACCCC________CCCCGG__CC____
11._GU_168_/H
AACCCC________CCCCGG__CC____
12._GU_168_/H
AACCCC________CCCCGG__CC____
13._GU_168_/H
AACCCC________CCCCGG__CC____
14._GU_168_/H
AACCCC________CCCCGG__CC____
15._GU_168_/H
AACCCC________CCCCGG__CC____
16._GU_168_/H
AACCCC________CCCCGG__CC____
17._GU_168_/H
AACCCC________CCCCGG__CC____
18._GU_168_/H
AACCCC________CCCCGG__CC____
19._GU_168_/H
AACCCC________CCCCGG__CC____
20._RUQ_223
__CCCC____CC__CC____TTCC____
21._RUQ_223
AACCCC________CCCCAG__CC____
22._RUQ_223
____CC____CC________________
23._GC-03-023-2-12
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GU_168_/H
AATTCC________CCCCGG__CC____
25._GC-03-23-2-12
AA__CCGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GU_168_/H
__GG____GG________TTAA__GGAA
11._GU_168_/H
__GG____GG________TTAA__GGAA
12._GU_168_/H
__GG____GG________TTAA__GGAA
13._GU_168_/H
__GG____GG________TTAA__GGAA
14._GU_168_/H
__GG____GG________TTAA__GGAA
15._GU_168_/H
__GG____GG________TTAA__GGAA
16._GU_168_/H
__GG____GG________TTAA__GGAA
17._GU_168_/H
__GG____GG________TTAA__GGAA
18._GU_168_/H
__GG____GG________TTAA__GGAA
19._GU_168_/H
__GG____GG________TTAA__GGAA
20._RUQ_223
______CC________GG__AACCGG__
21._RUQ_223
__GG____GG________ATAA__GGAA
22._RUQ_223
__GGCC__________________GG__
23._GC-03-023-2-12
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GU_168_/H
__AA____CC________TTAA__GGAA
25._GC-03-23-2-12
CCGGCC__GGAAAGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-03-023-2-12
TTTTGG__CCGGTTGGGGGGCCGGCCGG
8._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GU_168_/H
______CC__GGTT____GG________
11._GU_168_/H
______CC__GGTT____GG________
12._GU_168_/H
______CC__GGTT____GG________
13._GU_168_/H
______CC__GGTT____GG________
14._GU_168_/H
______CC__GGTT____GG________
15._GU_168_/H
______CC__GGTT____GG________
16._GU_168_/H
______CC__GGTT____GG________
17._GU_168_/H
______CC__GGTT____GG________
18._GU_168_/H
__________GGTT____GG________
19._GU_168_/H
______CC__GGTT____GG________
20._RUQ_223
____GGCCCCAGTT____AGCC____GG
21._RUQ_223
______CC__AGTT____AG________
22._RUQ_223
______CC__AG________CC______
23._GC-03-023-2-12
TTGGAACCCCGGTTGGTTAATTAACCGG
24._GU_168_/H
______CC__GGTT____AA________
25._GC-03-23-2-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTT__CCTT
9._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GU_168_/H
__TT__________________TTCC__
11._GU_168_/H
__TT__________________TTCC__
12._GU_168_/H
__TT__________________TTCC__
13._GU_168_/H
__TT__________________TTCC__
14._GU_168_/H
__TT__________________TTCC__
15._GU_168_/H
__TT__________________TTCC__
16._GU_168_/H
__TT__________________TTCC__
17._GU_168_/H
__TT__________________TTCC__
18._GU_168_/H
__TT__________________TTCC__
19._GU_168_/H
__TT____________________CC__
20._RUQ_223
TT____GG____________TTTT__TT
21._RUQ_223
__TT__________________TTCC__
22._RUQ_223
______GG____________________
23._GC-03-023-2-12
TTCCAAGGAACCCCGGGGTTTTCCTTTT
24._GU_168_/H
__CC__________________CCTT__
25._GC-03-23-2-12
__AA__GGAAGG__GGGGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-03-023-2-12
GGCCCCCCAAGGGG__GGGGGGAACCCC
10._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
11._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
12._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
13._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
14._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
15._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
16._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
17._GU_168_/H
__CC__CCAAGG____GGGGGG______
18._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
19._GU_168_/H
__CC__CCAAGG__AAGGGGGG______
20._RUQ_223
__CCCCCCAA__GGAAGGGGGGAA____
21._RUQ_223
__CC__CCAAGG__AAGGGGGG______
22._RUQ_223
GG____________AAGG__GGAA____
23._GC-03-023-2-12
__CCTTCTAAGGGGACAATTGGGGTTCC
24._GU_168_/H
__CC__CTAAGG__ACAATTGG______
25._GC-03-23-2-12
GGGGGGGGAAGGGGAAGGCCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCCCCAACCCCGGAACCCCTTAACCCC
1._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
2._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
3._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
4._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
5._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
6._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
7._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
8._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
9._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
10._GU_168_/H
AGCC__________AACC______CCCC
11._GU_168_/H
AGCC__________AACC______CCCC
12._GU_168_/H
AGCC__________AACC______CCCC
13._GU_168_/H
AGCC__________AACC______CCCC
14._GU_168_/H
AGCC__________AACC______CCCC
15._GU_168_/H
AGCC__________AACC______CCCC
16._GU_168_/H
AGCC__________AACC______CCCC
17._GU_168_/H
AGCC__________AACC______CCCC
18._GU_168_/H
AGCC__________AACC______CCCC
19._GU_168_/H
AGCC__________AACC______CCCC
20._RUQ_223
______________AAGG____AACC__
21._RUQ_223
AACC__________AAGG______CCCT
22._RUQ_223
AA____________AAGG____AA____
23._GC-03-023-2-12
GGTTAAAACCAAAACCGGCCTTAATTTT
24._GU_168_/H
GGTT__________CCGG______TTTT
25._GC-03-23-2-12
__GGCCAACCCC__AAGGGGTTAAGGGG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
10._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
11._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
12._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
14._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
17._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
18._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
19._GU_168_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
20._RUQ_223
____AGCCCCTT______X_XX_XX_XX_XX_X
21._RUQ_223
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
22._RUQ_223
CC____CC__TT______X_XX_XX_XX_XX_X
23._GC-03-023-2-12
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
24._GU_168_/H
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
25._GC-03-23-2-12
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

11._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

12._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

13._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

14._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

15._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

16._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

17._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

18._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

19._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

88.5 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

85.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

23._GU_168_/H GC-03-023-2-12

66.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

25._GU_168_/H GC-03-23-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240