SNP Profiles of LCT EEN 46   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCCCCAGAGTTTTCCTTAACTTTCT
1._GC-03-033-3-12
AAACCCCCAGAGTTTTCCTTAACTTTCT
2._LCT_EEN_46
AAACCCCC________CCTTAA__TT__
3._LCT_EEN_46
AAACCCCC________CCTTAA__TT__
4._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
5._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
6._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
7._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
8._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
9._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
10._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
11._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
12._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
13._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
14._GC-03-033-3-12
AAACTTACGGAGCTCTCCCCGGTTCCTT
15._LCT_EEN_46
TTCCCTCC________CTCTAG__CT__
16._LCT_EEN_46
TTCCCTCC________CTCTAG__CT__
17._LCT_EEN_46
AAACTTAC________CCCCGG__CC__
18._MITC-000412
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGGGCCAACTAGATATCG
1._GC-03-033-3-12
ATAAAAGGCCCGGGCCAACTAGATATCG
2._LCT_EEN_46
______GG____GG________ATAT__
3._LCT_EEN_46
______GG____GG________ATAT__
4._GC-03-033-3-12
ATACAAGGGGGGGGTTAACTGGAAATCG
5._GC-03-033-3-12
ATACAAGGGGGGGGTTAACTGGAAATCG
6._GC-03-033-3-12
ATACAAGGGGGGGGTTAACTGGAAATCG
7._GC-03-033-3-12
ATACAAGGGGGGGGTTAACTGGAAATCG
8._GC-03-033-3-12
ATACAAGGGGGGGGTTAACTGGAAATCG
9._LCT_EEN_46
______GG____GG________AAAT__
10._LCT_EEN_46
______GG____GG________AAAT__
11._LCT_EEN_46
______GG____GG________AAAT__
12._LCT_EEN_46
______GG____GG________AAAT__
13._LCT_EEN_46
______GG____GG________AAAT__
14._GC-03-033-3-12
AA____AAGGCCGGCCAATTGGTTAACC
15._LCT_EEN_46
______GG____GG________AAAT__
16._LCT_EEN_46
______GG____GG________AAAT__
17._LCT_EEN_46
______AA____GG________TTAA__
18._MITC-000412
TTCCGGAACC__GGAAGGAAGGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGTGGGGCCAAGGGGTTGGCCGG
1._GC-03-033-3-12
CCATTTGTGGGGCCAAGGGGTTGGCCGG
2._LCT_EEN_46
CCAT______GG__AAGG____GG____
3._LCT_EEN_46
CCAT______GG__AAGG____GG____
4._GC-03-033-3-12
GGAATTTTAGCCCCAATTGGTTAGTTGG
5._GC-03-033-3-12
GGAATTTTAGCCCCAATTGGTTAGTTGG
6._GC-03-033-3-12
GGAATTTTAGCCCCAATTGGTTAGTTGG
7._GC-03-033-3-12
GGAATTTTAGCCCCAATTGGTTAGTTGG
8._GC-03-033-3-12
GGAATTTTAGCCCCAATTGGTTAGTTGG
9._LCT_EEN_46
GGAA______CC__AATT____AG____
10._LCT_EEN_46
GGAA______CC__AATT____AG____
11._LCT_EEN_46
GGAA______CC__AATT____AG____
12._LCT_EEN_46
GGAA______CC__AATT____AG____
13._LCT_EEN_46
GGAA______CC__AATT____AG____
14._GC-03-033-3-12
GGATTTGTAGCCCCAGGTGTTTAGTTAA
15._LCT_EEN_46
GGAA______CC__AATT____AG____
16._LCT_EEN_46
GGAA______CC__AATT____AG____
17._LCT_EEN_46
GGAT______CC__AGGT____AG____
18._MITC-000412
CCAAAACCGGCCCCGGAACCAAAAAAAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTCTAGGGAGCCACGGAGGTTTTT
1._GC-03-033-3-12
CCGGTTCTAGGGAGCCACGGAGGT__TT
2._LCT_EEN_46
______CT__________________TT
3._LCT_EEN_46
______CT__________________TT
4._GC-03-033-3-12
CCGGTTCTAAGGAACTACGGGGTTTTCC
5._GC-03-033-3-12
CCGGTTCTAAGGAACTACGGGGTTTTCC
6._GC-03-033-3-12
CCGGTTCTAAGGAACTACGGGGTTTTCC
7._GC-03-033-3-12
CCGGTTCTAAGGAACTACGGGGTTTTCC
8._GC-03-033-3-12
CCGGTTCTAAGGAACTACGGGGTTTTCC
9._LCT_EEN_46
______CT__________________CC
10._LCT_EEN_46
______CT__________________CC
11._LCT_EEN_46
______CT__________________CC
12._LCT_EEN_46
______CT__________________CC
13._LCT_EEN_46
______CT__________________CC
14._GC-03-033-3-12
CCGGTTCCAAGGAACCACAGAGGGTTCT
15._LCT_EEN_46
______CT__________________CC
16._LCT_EEN_46
______CT__________________CC
17._LCT_EEN_46
______CC__________________CT
18._MITC-000412
GGCC__GG__GGAAGG__GGGGAAAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTGGCCCCTTCCGGGGAGGGGTAGCT
1._GC-03-033-3-12
CCTTGGCCCCTTCCGGGGAGGGGTAGCT
2._LCT_EEN_46
CC____CC__TTCCGG__AGGGGT____
3._LCT_EEN_46
CC____CC__TTCCGG__AGGGGT____
4._GC-03-033-3-12
TTTTGGCCCCTTCCCCAAAAGTGGAGTT
5._GC-03-033-3-12
TTTTGGCCCCTTCCCCAAAAGTGGAGTT
6._GC-03-033-3-12
TTTTGGCCCCTTCCCCAAAAGTGGAGTT
7._GC-03-033-3-12
TTTTGGCCCCTTCCCCAAAAGTGGAGTT
8._GC-03-033-3-12
TTTTGGCCCCTTCCCCAAAAGTGGAGTT
9._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
10._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
11._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
12._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
13._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
14._GC-03-033-3-12
CTTTAGCCCTCCACGGGGAAGTGGAGTT
15._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
16._LCT_EEN_46
TT____CC__TTCCCC__AAGTGG____
17._LCT_EEN_46
CT____CC__CCACGG__AAGTGG____
18._MITC-000412
AAAAAAGGAAGGAAGGGGAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACAGACCCAAAACCCCAAACTT
1._GC-03-033-3-12
CCAACTACAGACCCAAAACCCCAAACTT
2._LCT_EEN_46
__AACT__________AACC______TT
3._LCT_EEN_46
__AACT__________AACC______TT
4._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
5._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
6._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
7._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
8._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
9._LCT_EEN_46
__AACT__________AACG______TT
10._LCT_EEN_46
__AACT__________AACG______TT
11._LCT_EEN_46
__AACT__________AACG______TT
12._LCT_EEN_46
__AACT__________AACG______TT
13._LCT_EEN_46
__AACT__________AACG______TT
14._GC-03-033-3-12
CCAGCTCCAACCAAAACCGGCCATACTT
15._LCT_EEN_46
__AGCT__________AACG______TT
16._LCT_EEN_46
__AGCT__________AACG______TT
17._LCT_EEN_46
__AGCT__________CCGG______TT
18._MITC-000412
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCCAGCCCCGGCTATGGX_XX_XX_XX_X
1._GC-03-033-3-12
CTCCCCAGCCCCGGCTATGGX_XX_XX_XX_X
2._LCT_EEN_46
CTCC__AG__CCGGCT____X_XX_XX_XX_X
3._LCT_EEN_46
CTCC__AG__CCGGCT____X_XX_XX_XX_X
4._GC-03-033-3-12
TTCC__AGTTCCGTCCAAGGX_XX_XX_XX_X
5._GC-03-033-3-12
TTCCTTAGTTCC__CCAAGGX_XX_XX_XX_X
6._GC-03-033-3-12
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
7._GC-03-033-3-12
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
8._GC-03-033-3-12
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
9._LCT_EEN_46
TTCC__AG__CC__CC____X_XX_XX_XX_X
10._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
11._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
12._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
13._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
14._GC-03-033-3-12
TTCTCTAGCCCCTTTTAAGGX_XX_XX_XX_X
15._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
16._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
17._LCT_EEN_46
TTCT__AG__CCTTTT____X_XX_XX_XX_X
18._MITC-000412
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: LCT_EEN_46 GC-03-033-3-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

1._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

2._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

3._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

4._LCT_EEN_46 GC-03-033-3-12

67.9 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._LCT_EEN_46 GC-03-033-3-12

67.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._LCT_EEN_46

62.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

10._LCT_EEN_46

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

11._LCT_EEN_46

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

12._LCT_EEN_46

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

13._LCT_EEN_46

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_46 GC-03-033-3-12

60.9 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._LCT_EEN_46

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

16._LCT_EEN_46

60.3 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

17._LCT_EEN_46

50 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

26.3 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240