SNP Profiles of LCT_EEN_46   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCCCCAGAGTTTTCCTTAACTTTCT
1._LCT_EEN_46___
AAACCCCCAGAGTTTTCCTTAACTTTCT
2._LCT_EEN_46___
AAACCCCC________CCTTAA__TT__
3._LCT_EEN_46___
AAACCCCC________CCTTAA__TT__
4._LCT_EEN_46___
TT__CTCCAAAGTTCTCTCTAGTTCTCC
5._LCT_EEN_46___
TT__CTCCAAAGTTCTCTCTAGTTCTCC
6._LCT_EEN_46___
TT__CTCCAAAGTTCTCTCTAGTTCTCC
7._LCT_EEN_46___
TT__CTCCAAAGTTCTCTCTAGTTCTCC
8._LCT_EEN_46___
TT__CTCCAAAGTTCTCTCTAGTTCTCC
9._LCT_EEN_46___
TT__CTCC________CTCTAG__CT__
10._LCT_EEN_46___
TT__CTCC________CTCTAG__CT__
11._LCT_EEN_46___
TT__CTCC________CTCTAG__CT__
12._LCT_EEN_46___
TT__CTCC________CTCTAG__CT__
13._LCT_EEN_46___
TT__CTCC________CTCTAG__CT__
14._LCT_EEN_46___
TTCCCTCC________CTCTAG__CT__
15._LCT_EEN_46___
TTCCCTCC________CTCTAG__CT__
16._LCT_EEN_46___
AAACTTACGGAGCTCTCCCCGGTTCCTT
17._LCT_EEN_46___
AAACTTAC________CCCCGG__CC__
18._LCT_EEN_46___
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGGGCCAACTAGATATCG
1._LCT_EEN_46___
ATAAAAGGCCCGGGCCAACTAGATATCG
2._LCT_EEN_46___
______GG____GG________ATAT__
3._LCT_EEN_46___
______GG____GG________ATAT__
4._LCT_EEN_46___
ATACAAGGGGGGGGTTAACTGGAAATCG
5._LCT_EEN_46___
ATACAAGGGGGGGGTTAACTGGAAATCG
6._LCT_EEN_46___
ATACAAGGGGGGGGTTAACTGGAAATCG
7._LCT_EEN_46___
ATACAAGGGGGGGGTTAACTGGAAATCG
8._LCT_EEN_46___
ATACAAGGGGGGGGTTAACTGGAAATCG
9._LCT_EEN_46___
______GG____GG________AAAT__
10._LCT_EEN_46___
______GG____GG________AAAT__
11._LCT_EEN_46___
______GG____GG________AAAT__
12._LCT_EEN_46___
______GG____GG________AAAT__
13._LCT_EEN_46___
______GG____GG________AAAT__
14._LCT_EEN_46___
______GG____GG________AAAT__
15._LCT_EEN_46___
______GG____GG________AAAT__
16._LCT_EEN_46___
AA____AAGGCCGGCCAATTGGTTAACC
17._LCT_EEN_46___
______AA____GG________TTAA__
18._LCT_EEN_46___
TTCCGGAACC__GGAAGGAAGGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGTGGGGCCAAGGGGTTGGCCGG
1._LCT_EEN_46___
CCATTTGTGGGGCCAAGGGGTTGGCCGG
2._LCT_EEN_46___
CCAT______GG__AAGG____GG____
3._LCT_EEN_46___
CCAT______GG__AAGG____GG____
4._LCT_EEN_46___
GGAATTTTAGCCCCAATTGGTTAGTTGG
5._LCT_EEN_46___
GGAATTTTAGCCCCAATTGGTTAGTTGG
6._LCT_EEN_46___
GGAATTTTAGCCCCAATTGGTTAGTTGG
7._LCT_EEN_46___
GGAATTTTAGCCCCAATTGGTTAGTTGG
8._LCT_EEN_46___
GGAATTTTAGCCCCAATTGGTTAGTTGG
9._LCT_EEN_46___
GGAA______CC__AATT____AG____
10._LCT_EEN_46___
GGAA______CC__AATT____AG____
11._LCT_EEN_46___
GGAA______CC__AATT____AG____
12._LCT_EEN_46___
GGAA______CC__AATT____AG____
13._LCT_EEN_46___
GGAA______CC__AATT____AG____
14._LCT_EEN_46___
GGAA______CC__AATT____AG____
15._LCT_EEN_46___
GGAA______CC__AATT____AG____
16._LCT_EEN_46___
GGATTTGTAGCCCCAGGTGTTTAGTTAA
17._LCT_EEN_46___
GGAT______CC__AGGT____AG____
18._LCT_EEN_46___
CCAAAACCGGCCCCGGAACCAAAAAAAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTCTAGGGAGCCACGGAGGTTTCC
1._LCT_EEN_46___
CCGGTTCTAGGGAGCCACGGAGGTTTCC
2._LCT_EEN_46___
______CT________________TTCC
3._LCT_EEN_46___
______CT________________TTCC
4._LCT_EEN_46___
CCGGTTCTAAGGAACTACGGGGTTCCTT
5._LCT_EEN_46___
CCGGTTCTAAGGAACTACGGGGTTCCTT
6._LCT_EEN_46___
CCGGTTCTAAGGAACTACGGGGTTCCTT
7._LCT_EEN_46___
CCGGTTCTAAGGAACTACGGGGTTCCTT
8._LCT_EEN_46___
CCGGTTCTAAGGAACTACGGGGTTCCTT
9._LCT_EEN_46___
______CT________________CCTT
10._LCT_EEN_46___
______CT________________CCTT
11._LCT_EEN_46___
______CT________________CCTT
12._LCT_EEN_46___
______CT________________CCTT
13._LCT_EEN_46___
______CT________________CCTT
14._LCT_EEN_46___
______CT________________CCTT
15._LCT_EEN_46___
______CT________________CCTT
16._LCT_EEN_46___
CCGGTTCCAAGGAACCACAGAGGGCTCT
17._LCT_EEN_46___
______CC________________CTCT
18._LCT_EEN_46___
GGCC__GG__GGAAGG__GGGGAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTCCGGGGACAGGGGTAGCT
1._LCT_EEN_46___
TTGGCCCCTTCCGGGG__AGGGGTAGCT
2._LCT_EEN_46___
____CC__TTCCGG__ACAGGGGT____
3._LCT_EEN_46___
____CC__TTCCGG____AGGGGT____
4._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
5._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
6._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
7._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
8._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
9._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
10._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
11._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
12._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
13._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
14._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
15._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
16._LCT_EEN_46___
TTAGCCCTCCACGGGGAAAAGTGGAGTT
17._LCT_EEN_46___
____CC__CCACGG__AAAAGTGG____
18._LCT_EEN_46___
AAAAGGAAGGAAGGGGCCAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACAGACCCAAAACCCCAAACTT
1._LCT_EEN_46___
CCAACTACAGACCCAAAACCCCAAACTT
2._LCT_EEN_46___
__AACT__________AACC______TT
3._LCT_EEN_46___
__AACT__________AACC______TT
4._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
5._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
6._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
7._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
8._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
9._LCT_EEN_46___
__AACT__________AACG______TT
10._LCT_EEN_46___
__AACT__________AACG______TT
11._LCT_EEN_46___
__AACT__________AACG______TT
12._LCT_EEN_46___
__AACT__________AACG______TT
13._LCT_EEN_46___
__AACT__________AACG______TT
14._LCT_EEN_46___
__AGCT__________AACG______TT
15._LCT_EEN_46___
__AGCT__________AACG______TT
16._LCT_EEN_46___
CCAGCTCCAACCAAAACCGGCCATACTT
17._LCT_EEN_46___
__AGCT__________CCGG______TT
18._LCT_EEN_46___
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCCAGCCCCGGCTATGGX_XX_XX_XX_X
1._LCT_EEN_46___
CTCCCCAGCCCCGGCTATGGX_XX_XX_XX_X
2._LCT_EEN_46___
CTCC__AG__CCGGCT____X_XX_XX_XX_X
3._LCT_EEN_46___
CTCC__AG__CCGGCT____X_XX_XX_XX_X
4._LCT_EEN_46___
TTCC__AGTTCCGTCCAAGGX_XX_XX_XX_X
5._LCT_EEN_46___
TTCCTTAGTTCC__CCAAGGX_XX_XX_XX_X
6._LCT_EEN_46___
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
7._LCT_EEN_46___
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
8._LCT_EEN_46___
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
9._LCT_EEN_46___
TTCC__AG__CC__CC____X_XX_XX_XX_X
10._LCT_EEN_46___
TTCC__AG__CCGTCC____X_XX_XX_XX_X
11._LCT_EEN_46___
TTCC__AG__CCGTCC____X_XX_XX_XX_X
12._LCT_EEN_46___
TTCC__AG__CCGTCC____X_XX_XX_XX_X
13._LCT_EEN_46___
TTCC__AG__CCGTCC____X_XX_XX_XX_X
14._LCT_EEN_46___
TTCC__AG__CCGTCC____X_XX_XX_XX_X
15._LCT_EEN_46___
TTCC__AG__CCGTCC____X_XX_XX_XX_X
16._LCT_EEN_46___
TTCTCTAGCCCCTTTTAAGGX_XX_XX_XX_X
17._LCT_EEN_46___
TTCT__AG__CCTTTT____X_XX_XX_XX_X
18._LCT_EEN_46___
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: LCT_EEN_46 GC-03-033-3-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

1._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

2._LCT_EEN_46

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

3._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

4._LCT_EEN_46 GC-03-033-3-12

67.9 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._LCT_EEN_46 GC-03-033-3-12

67.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._LCT_EEN_46

63.2 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

10._LCT_EEN_46

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

11._LCT_EEN_46

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

12._LCT_EEN_46

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

13._LCT_EEN_46

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_46

61.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

15._LCT_EEN_46

61.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

60.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._LCT_EEN_46

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

26.9 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240