SNP Profiles of LCT EEN 46   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACTTACGGAGCTCTCCCCGGTTCCTT
1._LCT_EEN_46
AAACTTAC________CCCCGG__CC__
2._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
3._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
4._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
5._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
6._GC-03-033-3-12
TT__CTCCAAAGTTCTCTCTAGTTCTCC
7._GC-03-033-3-12
AAACCCCCAGAGTTTTCCTTAACTTTCT
8._GC-03-033-3-12
AAACCCCCAGAGTTTTCCTTAACTTTCT
9._LCT_EEN_46
TTCCCTCC________CTCTAG__CT__
10._LCT_EEN_46
TTCCCTCC________CTCTAG__CT__
11._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
12._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
13._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
14._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
15._LCT_EEN_46
TT__CTCC________CTCTAG__CT__
16._LCT_EEN_46
AAACCCCC________CCTTAA__TT__
17._LCT_EEN_46
AAACCCCC________CCTTAA__TT__
18._MITC-000412
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCGGCCAATTGGTTAACCGGAT
1._LCT_EEN_46
__AA____GG________TTAA__GGAT
2._GC-03-033-3-12
ATGGGGGGGGTTAACTGGAAATCGGGAA
3._GC-03-033-3-12
ATGGGGGGGGTTAACTGGAAATCGGGAA
4._GC-03-033-3-12
ATGGGGGGGGTTAACTGGAAATCGGGAA
5._GC-03-033-3-12
ATGGGGGGGGTTAACTGGAAATCGGGAA
6._GC-03-033-3-12
ATGGGGGGGGTTAACTGGAAATCGGGAA
7._GC-03-033-3-12
ATGGCCCGGGCCAACTAGATATCGCCAT
8._GC-03-033-3-12
ATGGCCCGGGCCAACTAGATATCGCCAT
9._LCT_EEN_46
__GG____GG________AAAT__GGAA
10._LCT_EEN_46
__GG____GG________AAAT__GGAA
11._LCT_EEN_46
__GG____GG________AAAT__GGAA
12._LCT_EEN_46
__GG____GG________AAAT__GGAA
13._LCT_EEN_46
__GG____GG________AAAT__GGAA
14._LCT_EEN_46
__GG____GG________AAAT__GGAA
15._LCT_EEN_46
__GG____GG________AAAT__GGAA
16._LCT_EEN_46
__GG____GG________ATAT__CCAT
17._LCT_EEN_46
__GG____GG________ATAT__CCAT
18._MITC-000412
TTAACC__GGAAGGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGTAGCCCCAGGTGTTTAGTTAACCGG
1._LCT_EEN_46
______CC__AGGT____AG________
2._GC-03-033-3-12
TTTTAGCCCCAATTGGTTAGTTGGCCGG
3._GC-03-033-3-12
TTTTAGCCCCAATTGGTTAGTTGGCCGG
4._GC-03-033-3-12
TTTTAGCCCCAATTGGTTAGTTGGCCGG
5._GC-03-033-3-12
TTTTAGCCCCAATTGGTTAGTTGGCCGG
6._GC-03-033-3-12
TTTTAGCCCCAATTGGTTAGTTGGCCGG
7._GC-03-033-3-12
TTGTGGGGCCAAGGGGTTGGCCGGCCGG
8._GC-03-033-3-12
TTGTGGGGCCAAGGGGTTGGCCGGCCGG
9._LCT_EEN_46
______CC__AATT____AG________
10._LCT_EEN_46
______CC__AATT____AG________
11._LCT_EEN_46
______CC__AATT____AG________
12._LCT_EEN_46
______CC__AATT____AG________
13._LCT_EEN_46
______CC__AATT____AG________
14._LCT_EEN_46
______CC__AATT____AG________
15._LCT_EEN_46
______CC__AATT____AG________
16._LCT_EEN_46
______GG__AAGG____GG________
17._LCT_EEN_46
______GG__AAGG____GG________
18._MITC-000412
AACCGGCCCCGGAACCAAAAAAAAGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGAACCACAGAGGGTTCTCTTT
1._LCT_EEN_46
__CC__________________CTCT__
2._GC-03-033-3-12
TTCTAAGGAACTACGGGGTTTTCCTTTT
3._GC-03-033-3-12
TTCTAAGGAACTACGGGGTTTTCCTTTT
4._GC-03-033-3-12
TTCTAAGGAACTACGGGGTTTTCCTTTT
5._GC-03-033-3-12
TTCTAAGGAACTACGGGGTTTTCCTTTT
6._GC-03-033-3-12
TTCTAAGGAACTACGGGGTTTTCCTTTT
7._GC-03-033-3-12
TTCTAGGGAGCCACGGAGGTTTTTCCTT
8._GC-03-033-3-12
TTCTAGGGAGCCACGGAGGT__TTCCTT
9._LCT_EEN_46
__CT__________________CCTT__
10._LCT_EEN_46
__CT__________________CCTT__
11._LCT_EEN_46
__CT__________________CCTT__
12._LCT_EEN_46
__CT__________________CCTT__
13._LCT_EEN_46
__CT__________________CCTT__
14._LCT_EEN_46
__CT__________________CCTT__
15._LCT_EEN_46
__CT__________________CCTT__
16._LCT_EEN_46
__CT__________________TTCC__
17._LCT_EEN_46
__CT__________________TTCC__
18._MITC-000412
__GG__GGAAGG__GGGGAAAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCCCTCCACGGGGAAAAGTGGAGTTCC
1._LCT_EEN_46
__CC__CCACGG__AAAAGTGG______
2._GC-03-033-3-12
GGCCCCTTCCCCAAACAAGTGGAGTTCC
3._GC-03-033-3-12
GGCCCCTTCCCCAAACAAGTGGAGTTCC
4._GC-03-033-3-12
GGCCCCTTCCCCAAACAAGTGGAGTTCC
5._GC-03-033-3-12
GGCCCCTTCCCCAAACAAGTGGAGTTCC
6._GC-03-033-3-12
GGCCCCTTCCCCAAACAAGTGGAGTTCC
7._GC-03-033-3-12
GGCCCCTTCCGGGG__AGGGGTAGCTCC
8._GC-03-033-3-12
GGCCCCTTCCGGGGACAGGGGTAGCTCC
9._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
10._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
11._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
12._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
13._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
14._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
15._LCT_EEN_46
__CC__TTCCCC__ACAAGTGG______
16._LCT_EEN_46
__CC__TTCCGG____AGGGGT______
17._LCT_EEN_46
__CC__TTCCGG__ACAGGGGT______
18._MITC-000412
AAGGAAGGAAGGGGCCAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCTCCAACCAAAACCGGCCATACTTTT
1._LCT_EEN_46
AGCT__________CCGG______TTTT
2._GC-03-033-3-12
AACTACGGAAACAAAACGCCAACCTTTT
3._GC-03-033-3-12
AACTACGGAAACAAAACGCCAACCTTTT
4._GC-03-033-3-12
AACTACGGAAACAAAACGCCAACCTTTT
5._GC-03-033-3-12
AACTACGGAAACAAAACGCCAACCTTTT
6._GC-03-033-3-12
AACTACGGAAACAAAACGCCAACCTTTT
7._GC-03-033-3-12
AACTACAGACCCAAAACCCCAAACTTCT
8._GC-03-033-3-12
AACTACAGACCCAAAACCCCAAACTTCT
9._LCT_EEN_46
AGCT__________AACG______TTTT
10._LCT_EEN_46
AGCT__________AACG______TTTT
11._LCT_EEN_46
AACT__________AACG______TTTT
12._LCT_EEN_46
AACT__________AACG______TTTT
13._LCT_EEN_46
AACT__________AACG______TTTT
14._LCT_EEN_46
AACT__________AACG______TTTT
15._LCT_EEN_46
AACT__________AACG______TTTT
16._LCT_EEN_46
AACT__________AACC______TTCT
17._LCT_EEN_46
AACT__________AACC______TTCT
18._MITC-000412
__AACCAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CTCTAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._LCT_EEN_46
CT__AG__CCTTTT____X_XX_XX_XX_XX_X
2._GC-03-033-3-12
CCTTAGTTCC__CCAAGGX_XX_XX_XX_XX_X
3._GC-03-033-3-12
CC__AGTTCCGTCCAAGGX_XX_XX_XX_XX_X
4._GC-03-033-3-12
CCTTAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
5._GC-03-033-3-12
CCTTAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
6._GC-03-033-3-12
CCTTAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
7._GC-03-033-3-12
CCCCAGCCCCGGCTATGGX_XX_XX_XX_XX_X
8._GC-03-033-3-12
CCCCAGCCCCGGCTATGGX_XX_XX_XX_XX_X
9._LCT_EEN_46
CC__AG__CCGTCC____X_XX_XX_XX_XX_X
10._LCT_EEN_46
CC__AG__CCGTCC____X_XX_XX_XX_XX_X
11._LCT_EEN_46
CC__AG__CC__CC____X_XX_XX_XX_XX_X
12._LCT_EEN_46
CC__AG__CCGTCC____X_XX_XX_XX_XX_X
13._LCT_EEN_46
CC__AG__CCGTCC____X_XX_XX_XX_XX_X
14._LCT_EEN_46
CC__AG__CCGTCC____X_XX_XX_XX_XX_X
15._LCT_EEN_46
CC__AG__CCGTCC____X_XX_XX_XX_XX_X
16._LCT_EEN_46
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
17._LCT_EEN_46
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
18._MITC-000412
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: LCT_EEN_46 GC-03-033-3-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._LCT_EEN_46

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

2._LCT_EEN_46 GC-03-033-3-12

62.6 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._LCT_EEN_46 GC-03-033-3-12

62.6 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._LCT_EEN_46 GC-03-033-3-12

60.9 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._LCT_EEN_46 GC-03-033-3-12

60.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

9._LCT_EEN_46

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

10._LCT_EEN_46

58.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

11._LCT_EEN_46

57.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

12._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

13._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

14._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

15._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

16._LCT_EEN_46

50 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

17._LCT_EEN_46

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

36.7 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240