SNP Profiles of LCTEEN-46   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
1._GC-03-033-3-12
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
2._GC-03-033-3-12
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
3._GC-03-033-3-12
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
4._GC-03-033-3-12
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
5._LCT_EEN_46
TTCTCC________CTCTAG__CT____
6._LCT_EEN_46
TTCTCC________CTCTAG__CT____
7._LCT_EEN_46
TTCTCC________CTCTAG__CT____
8._LCT_EEN_46
TTCTCC________CTCTAG__CT____
9._LCT_EEN_46
TTCTCC________CTCTAG__CT____
10._LCT_EEN_46
TTCTCC________CTCTAG__CT____
11._LCT_EEN_46
TTCTCC________CTCTAG__CT____
12._GC-03-033-3-12
AACCCCAGAGTTTTCCTTAACTTTCTAT
13._GC-03-033-3-12
AACCCCAGAGTTTTCCTTAACTTTCTAT
14._LCT_EEN_46
AACCCC________CCTTAA__TT____
15._GC-03-033-3-12
AATTACGGAGCTCTCCCCGGTTCCTTAA
16._LCT_EEN_46
AACCCC________CCTTAA__TT____
17._LCT_EEN_46
AATTAC________CCCCGG__CC____
18._MITC-000412
AA__AAGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAGGGGGGGGTTAACTGGAAATCGGG
1._GC-03-033-3-12
ACAAGGGGGGGGTTAACTGGAAATCGGG
2._GC-03-033-3-12
ACAAGGGGGGGGTTAACTGGAAATCGGG
3._GC-03-033-3-12
ACAAGGGGGGGGTTAACTGGAAATCGGG
4._GC-03-033-3-12
ACAAGGGGGGGGTTAACTGGAAATCGGG
5._LCT_EEN_46
____GG____GG________AAAT__GG
6._LCT_EEN_46
____GG____GG________AAAT__GG
7._LCT_EEN_46
____GG____GG________AAAT__GG
8._LCT_EEN_46
____GG____GG________AAAT__GG
9._LCT_EEN_46
____GG____GG________AAAT__GG
10._LCT_EEN_46
____GG____GG________AAAT__GG
11._LCT_EEN_46
____GG____GG________AAAT__GG
12._GC-03-033-3-12
AAAAGGCCCGGGCCAACTAGATATCGCC
13._GC-03-033-3-12
AAAAGGCCCGGGCCAACTAGATATCGCC
14._LCT_EEN_46
____GG____GG________ATAT__CC
15._GC-03-033-3-12
____AAGGCCGGCCAATTGGTTAACCGG
16._LCT_EEN_46
____GG____GG________ATAT__CC
17._LCT_EEN_46
____AA____GG________TTAA__GG
18._MITC-000412
CCGGAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTTTAGCCCCAATTGGTTAGTTGGCC
1._GC-03-033-3-12
AATTTTAGCCCCAATTGGTTAGTTGGCC
2._GC-03-033-3-12
AATTTTAGCCCCAATTGGTTAGTTGGCC
3._GC-03-033-3-12
AATTTTAGCCCCAATTGGTTAGTTGGCC
4._GC-03-033-3-12
AATTTTAGCCCCAATTGGTTAGTTGGCC
5._LCT_EEN_46
AA______CC__AATT____AG______
6._LCT_EEN_46
AA______CC__AATT____AG______
7._LCT_EEN_46
AA______CC__AATT____AG______
8._LCT_EEN_46
AA______CC__AATT____AG______
9._LCT_EEN_46
AA______CC__AATT____AG______
10._LCT_EEN_46
AA______CC__AATT____AG______
11._LCT_EEN_46
AA______CC__AATT____AG______
12._GC-03-033-3-12
ATTTGTGGGGCCAAGGGGTTGGCCGGCC
13._GC-03-033-3-12
ATTTGTGGGGCCAAGGGGTTGGCCGGCC
14._LCT_EEN_46
AT______GG__AAGG____GG______
15._GC-03-033-3-12
ATTTGTAGCCCCAGGTGTTTAGTTAACC
16._LCT_EEN_46
AT______GG__AAGG____GG______
17._LCT_EEN_46
AT______CC__AGGT____AG______
18._MITC-000412
AAAACCGGCCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACTACGGGGTTTTCCTT
1._GC-03-033-3-12
GGTTCTAAGGAACTACGGGGTTTTCCTT
2._GC-03-033-3-12
GGTTCTAAGGAACTACGGGGTTTTCCTT
3._GC-03-033-3-12
GGTTCTAAGGAACTACGGGGTTTTCCTT
4._GC-03-033-3-12
GGTTCTAAGGAACTACGGGGTTTTCCTT
5._LCT_EEN_46
____CT__________________CCTT
6._LCT_EEN_46
____CT__________________CCTT
7._LCT_EEN_46
____CT__________________CCTT
8._LCT_EEN_46
____CT__________________CCTT
9._LCT_EEN_46
____CT__________________CCTT
10._LCT_EEN_46
____CT__________________CCTT
11._LCT_EEN_46
____CT__________________CCTT
12._GC-03-033-3-12
GGTTCTAGGGAGCCACGGAGGT__TTCC
13._GC-03-033-3-12
GGTTCTAGGGAGCCACGGAGGTTTTTCC
14._LCT_EEN_46
____CT__________________TTCC
15._GC-03-033-3-12
GGTTCCAAGGAACCACAGAGGGTTCTCT
16._LCT_EEN_46
____CT__________________TTCC
17._LCT_EEN_46
____CC__________________CTCT
18._MITC-000412
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTCCCCAAACAAGTGGAGTT
1._GC-03-033-3-12
TTGGCCCCTTCCCCAAACAAGTGGAGTT
2._GC-03-033-3-12
TTGGCCCCTTCCCCAAACAAGTGGAGTT
3._GC-03-033-3-12
TTGGCCCCTTCCCCAAACAAGTGGAGTT
4._GC-03-033-3-12
TTGGCCCCTTCCCCAAACAAGTGGAGTT
5._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
6._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
7._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
8._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
9._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
10._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
11._LCT_EEN_46
____CC__TTCCCC__ACAAGTGG____
12._GC-03-033-3-12
TTGGCCCCTTCCGGGGACAGGGGTAGCT
13._GC-03-033-3-12
TTGGCCCCTTCCGGGG__AGGGGTAGCT
14._LCT_EEN_46
____CC__TTCCGG__ACAGGGGT____
15._GC-03-033-3-12
TTAGCCCTCCACGGGGAAAAGTGGAGTT
16._LCT_EEN_46
____CC__TTCCGG____AGGGGT____
17._LCT_EEN_46
____CC__CCACGG__AAAAGTGG____
18._MITC-000412
AAAAGGAAGGAAGGGGCCAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACGGAAACAAAACGCCAACCTT
1._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
2._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
3._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
4._GC-03-033-3-12
CCAACTACGGAAACAAAACGCCAACCTT
5._LCT_EEN_46
__AACT__________AACG______TT
6._LCT_EEN_46
__AACT__________AACG______TT
7._LCT_EEN_46
__AACT__________AACG______TT
8._LCT_EEN_46
__AACT__________AACG______TT
9._LCT_EEN_46
__AACT__________AACG______TT
10._LCT_EEN_46
__AGCT__________AACG______TT
11._LCT_EEN_46
__AGCT__________AACG______TT
12._GC-03-033-3-12
CCAACTACAGACCCAAAACCCCAAACTT
13._GC-03-033-3-12
CCAACTACAGACCCAAAACCCCAAACTT
14._LCT_EEN_46
__AACT__________AACC______TT
15._GC-03-033-3-12
CCAGCTCCAACCAAAACCGGCCATACTT
16._LCT_EEN_46
__AACT__________AACC______TT
17._LCT_EEN_46
__AGCT__________CCGG______TT
18._MITC-000412
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
1._GC-03-033-3-12
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
2._GC-03-033-3-12
TTCCTTAGTTCCGTCCAAGGX_XX_XX_XX_X
3._GC-03-033-3-12
TTCCTTAGTTCC__CCAAGGX_XX_XX_XX_X
4._GC-03-033-3-12
TTCC__AGTTCCGTCCAAGGX_XX_XX_XX_X
5._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
6._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
7._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
8._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
9._LCT_EEN_46
TTCC__AG__CC__CC____X_XX_XX_XX_X
10._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
11._LCT_EEN_46
TTCC__AG__CCGTCC____X_XX_XX_XX_X
12._GC-03-033-3-12
CTCCCCAGCCCCGGCTATGGX_XX_XX_XX_X
13._GC-03-033-3-12
CTCCCCAGCCCCGGCTATGGX_XX_XX_XX_X
14._LCT_EEN_46
CTCC__AG__CCGGCT____X_XX_XX_XX_X
15._GC-03-033-3-12
TTCTCTAGCCCCTTTTAAGGX_XX_XX_XX_X
16._LCT_EEN_46
CTCC__AG__CCGGCT____X_XX_XX_XX_X
17._LCT_EEN_46
TTCT__AG__CCTTTT____X_XX_XX_XX_X
18._MITC-000412
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: LCT_EEN_46 GC-03-033-3-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._LCT_EEN_46 GC-03-033-3-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._LCT_EEN_46 GC-03-033-3-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

6._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

7._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

8._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

9._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

12._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

13._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._LCT_EEN_46

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

15._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._LCT_EEN_46

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

17._LCT_EEN_46

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

21.9 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240