SNP Profiles of EET-233   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTAAGGGGCCCCCTCCGGTTCTTT
1._IMC_54___
AACCCTAAGGGGCCCCCTCCGGTTCTTT
2._IMC_54___
AACCCTAAGGGGCCCCCTCCGGTTCTTT
3._IMC_54___
AACCCTAAGGGGCCCCCTCCGGTTCTTT
4._IMC_54___
AACCCTAAGGGGCCCCCTCCGGTTCTTT
5._IMC_54___
AACCCTAA________CTCCGG__CT__
6._IMC_54___
AACCCTAA________CTCCGG__CT__
7._IMC_54___
AACCCTAA________CTCCGG__CT__
8._IMC_54___
AACCCTAA________CTCCGG__CT__
9._IMC_54___
AACCCTAA________CTCCGG__CT__
10._IMC_54___
AACCCTAA________CTCCAG__CT__
11._IMC_54___
____CTAA____TT__CT____TTTT__
12._IMC_54___
______AA____TT______________
13._IMC_54___
ATCCCCAC________CTCTAG__CT__
14._IMC_54___
AACC__AAGGGG__GGAG__GGAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGGGCCGGCCAATTGGTTAACCAT
1._IMC_54___
AAAAGGGGCCGGCCAATTGGTTAACCAT
2._IMC_54___
AAAAGGGGCCGGCCAATTGGTTAACCAT
3._IMC_54___
AAAAGGGGCCGGCCAATTGGTTAACCAT
4._IMC_54___
AAAAGGGGCCGGCCAATTGGTTAACCAT
5._IMC_54___
____GG____GG________TTAACCAT
6._IMC_54___
____GG____GG________TTAACCAT
7._IMC_54___
____GG____GG________TTAACCAT
8._IMC_54___
____GG____GG________TTAACCAT
9._IMC_54___
____GG____GG________TTAACCAT
10._IMC_54___
____GG____GG________TTAACCAT
11._IMC_54___
________CC________GG__AACC__
12._IMC_54___
____GGTT________________CC__
13._IMC_54___
____GG____GG________ATATCCTT
14._IMC_54___
TTAAGGCC__GGGGAAAAGGTTAAGGAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
1._IMC_54___
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
2._IMC_54___
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
3._IMC_54___
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
4._IMC_54___
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
5._IMC_54___
______GG__AAGT____AG________
6._IMC_54___
______GG__AAGT____AG________
7._IMC_54___
______GG__AAGT____AG________
8._IMC_54___
______GG__AAGT____AG________
9._IMC_54___
______GG__AAGT____AG________
10._IMC_54___
______GG__AAGT____AG________
11._IMC_54___
____GGGGCCAAGT____AGCC____GG
12._IMC_54___
______GG__AA________CC______
13._IMC_54___
______GG__AAGT____GG________
14._IMC_54___
AACCGGGGCCAAACCCAAAGGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAGAGAACCCCGGAGTTTTCTCCTT
1._IMC_54___
TTTTAGAGAACCCCGGAGTTTTCTCCTT
2._IMC_54___
TTTTAGAGAACCCCGGAGTTTTCTCCTT
3._IMC_54___
TTTTAGAGAACCCCGGAGTTTTCTCCTT
4._IMC_54___
TTTTAGAGAACCCCGGAGTTTTCTCCTT
5._IMC_54___
__TT__________________CTCC__
6._IMC_54___
__TT__________________CTCC__
7._IMC_54___
__TT__________________CTCC__
8._IMC_54___
__TT__________________CTCC__
9._IMC_54___
__TT__________________CTCC__
10._IMC_54___
__TT__________________CTCC__
11._IMC_54___
TT____AG____________CTCT__TT
12._IMC_54___
______AG____________________
13._IMC_54___
__TT________________________
14._IMC_54___
__AA__AGAAGG__GGAGAAAGAGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCTTAAGGGGCCAGGTGGGGTTCG
1._IMC_54___
GGCCCCTTAAGGGGCCAGGTGGGGTTCG
2._IMC_54___
GGCCCCTTAAGGGGCCAGGTGGGGTTCG
3._IMC_54___
GGCCCCTTAAGGGGCCAGGTGGGGTTCG
4._IMC_54___
GGCCCCTTAAGGGGCCAGGTGGGGTTCG
5._IMC_54___
__CC__TTAAGG__CCAGGTGG______
6._IMC_54___
__CC__TTAAGG__CCAGGTGG______
7._IMC_54___
__CC__TTAAGG__CCAGGTGG______
8._IMC_54___
__CC__TTAAGG__CCAGGTGG______
9._IMC_54___
__CC__TTAAGG__CCAGGTGG______
10._IMC_54___
__CC____ACGG____AGGTGG______
11._IMC_54___
__CCCCTTAC__GGCCAGGTGGGG____
12._IMC_54___
GG____________CCAG__GGGG____
13._IMC_54___
______TTACCG__CCGGGGGT______
14._IMC_54___
GGGGGGAAACGGGGCCAGACCCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCAAAAACACAACCCGCCATACCCTT
1._IMC_54___
AACCAAAAACACAACCCGCCATACCCTT
2._IMC_54___
AACCAAAAACACAACCCGCCATACCCTT
3._IMC_54___
AACCAAAAACACAACCCGCCATACCCTT
4._IMC_54___
AACCAAAAACACAACCCGCCATACCCTT
5._IMC_54___
AACC__________CCCG______CCTT
6._IMC_54___
AACC__________CCCG______CCTT
7._IMC_54___
AACC__________CCCG______CCTT
8._IMC_54___
AACC__________CCCG______CCTT
9._IMC_54___
AACC__________CCCG______CCTT
10._IMC_54___
AACC__________CCCG______CCTT
11._IMC_54___
______________CCCG____ACCC__
12._IMC_54___
AA____________CCCG____AC____
13._IMC_54___
AACT__________CCCG______CCTT
14._IMC_54___
__GGAAAAACAC__CCCGGGATACGGAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAACCTTTTTTTTGGX_XX_XX_XX_XX_X
1._IMC_54___
CCCTAACCTTTTTTTTGGX_XX_XX_XX_XX_X
2._IMC_54___
CCCTAACCTTTTTTTTGGX_XX_XX_XX_XX_X
3._IMC_54___
CCCTAACCTTTTTTTTGGX_XX_XX_XX_XX_X
4._IMC_54___
CCCTAACCTTTTTTTTGGX_XX_XX_XX_XX_X
5._IMC_54___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
6._IMC_54___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
7._IMC_54___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
8._IMC_54___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
9._IMC_54___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
10._IMC_54___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
11._IMC_54___
____AACCTTTT______X_XX_XX_XX_XX_X
12._IMC_54___
CC____CC__TT______X_XX_XX_XX_XX_X
13._IMC_54___
____AA__CTGT______X_XX_XX_XX_XX_X
14._IMC_54___
__AG____AAAAAAAAGGX_XX_XX_XX_XX_X

Input profile: IMC_54 GC-04-018-1-18

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._IMC_54 GC-04-018-1-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._IMC_54 GC-04-018-1-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

3._IMC_54 GC-04-018-1-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

4._IMC_54 GC-04-018-1-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._IMC_54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4118 6 > FP
 Dapeng Zhang, 2016

6._IMC_54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4118 5 > FP
 Dapeng Zhang, 2016

7._IMC_54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4118 4 > FP
 Dapeng Zhang, 2016

8._IMC_54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4118 3 > FP
 Dapeng Zhang, 2016

9._IMC_54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4118 7
 Dapeng Zhang, 2016

10._IMC_54 RUQ_11

96.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._IMC_54 RUQ_11

93.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._IMC_54 RUQ_11

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

13._IMC_54

75.7 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D311
 Dapeng Zhang, 2016

14._IMC_54 GC-04-18-1-18

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 1, Rep: 18, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240