SNP Profiles of EET 399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGGGCTCCCCCTGGCTCTTT
1._EET_399_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
2._EET_399_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
3._EET_399_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
4._EET_399_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
5._EET_399_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
6._EET_399_[ECU]___
AAAACTACAGGGCTCCCCCTGGCTCTTT
7._EET_399_[ECU]___
AAAACTAC________CCCTGG__CT__
8._EET_399_[ECU]___
AAAACTAC________CCCTGG__CT__
9._EET_399_[ECU]___
AAAACTAC________CCCTGG__CT__
10._EET_399_[ECU]___
AAAACTAC________CCCTGG__CT__
11._EET_399_[ECU]___
AAAACTAC________CCCTGG__CT__
12._EET_399_[ECU]___
AAAACTAC________CCCTGG__CT__
13._EET_399_[ECU]___
AAACCTAC________CCCTGG__CT__
14._EET_399_[ECU]___
____CTAC____CT__CC____CTTT__
15._EET_399_[ECU]___
______AC____CT______________
16._EET_399_[ECU]___
AAAACTAC________CTCTGG__CC__
17._EET_399_[ECU]___
AAAC__ACAGGG__GGGG__GGAGAGAA
18._EET_399_[ECU]___
______CC____CT______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACGGCGGGCGCCAATTAGATAACGCG
1._EET_399_[ECU]___
ATACGGCGGGCGCCAATTAGATAACGCG
2._EET_399_[ECU]___
ATACGGCGGGCGCCAATTAGATAACGCG
3._EET_399_[ECU]___
ATACGGCGGGCGCCAATTAGATAACGCG
4._EET_399_[ECU]___
ATACGGCGGGCGCCAATTAGATAACGCG
5._EET_399_[ECU]___
ATACGGCGGGCGCCAATTAGATAACGCG
6._EET_399_[ECU]___
ATACGGCGGGCGCCAATTAGATAACGCG
7._EET_399_[ECU]___
____GG____CG________ATAA__CG
8._EET_399_[ECU]___
____GG____CG________ATAA__CG
9._EET_399_[ECU]___
____GG____CG________ATAA__CG
10._EET_399_[ECU]___
____GG____CG________ATAA__CG
11._EET_399_[ECU]___
____GG____CG________ATAA__CG
12._EET_399_[ECU]___
____GG____CG________ATAA__CG
13._EET_399_[ECU]___
____GG____CG________ATAA__CG
14._EET_399_[ECU]___
________GG____________AACCCG
15._EET_399_[ECU]___
____GGCT__________________CG
16._EET_399_[ECU]___
____AA____GG________ATAT__CG
17._EET_399_[ECU]___
ATACGGCG__CGGGAAAAAGATAACGCG
18._EET_399_[ECU]___
____AATT__________________GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGGGCCAAGTGGGTAGCCGGCC
1._EET_399_[ECU]___
AATTGTGGGGCCAAGTGGGTAGCCGGCC
2._EET_399_[ECU]___
AATTGTGGGGCCAAGTGGGTAGCCGGCC
3._EET_399_[ECU]___
AATTGTGGGGCCAAGTGGGTAGCCGGCC
4._EET_399_[ECU]___
AATTGTGGGGCCAAGTGGGTAGCCGGCC
5._EET_399_[ECU]___
AATTGTGGGGCCAAGTGGGTAGCCGGCC
6._EET_399_[ECU]___
AATTGTGGGGCCAAGTGGGTAGCCGGCC
7._EET_399_[ECU]___
AA______GG__AAGT____AG______
8._EET_399_[ECU]___
AA______GG__AAGT____AG______
9._EET_399_[ECU]___
AA______GG__AAGT____AG______
10._EET_399_[ECU]___
AA______GG__AAGT____AG______
11._EET_399_[ECU]___
AA______GG__AAGT____AG______
12._EET_399_[ECU]___
AA______GG__AAGT____AG______
13._EET_399_[ECU]___
AA______GG__AAGT____AG______
14._EET_399_[ECU]___
______GGGGCCAAGT____AGCC____
15._EET_399_[ECU]___
________GG__AA________CC____
16._EET_399_[ECU]___
AA______CC__AGGT____AG______
17._EET_399_[ECU]___
AAAAACGGGGCCAAACCCACAGGGGGGG
18._EET_399_[ECU]___
________CC__GG________CT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCACGGGGGTTTCTCC
1._EET_399_[ECU]___
GGTTTTAGAGAACCACGGGGGTTTCTCC
2._EET_399_[ECU]___
GGTTTTAGAGAACCACGGGGGTTTCTCC
3._EET_399_[ECU]___
GGTTTTAGAGAACCACGGGGGTTTCTCC
4._EET_399_[ECU]___
GGTTTTAGAGAACCACGGGGGTTTCTCC
5._EET_399_[ECU]___
GGTTTTAGAGAACCACGGGGGTTT__CC
6._EET_399_[ECU]___
GGTTTTAGAGAACCACGGGGGTTT__CC
7._EET_399_[ECU]___
____TT__________________CTCC
8._EET_399_[ECU]___
____TT__________________CTCC
9._EET_399_[ECU]___
____TT__________________CTCC
10._EET_399_[ECU]___
____TT____________________CC
11._EET_399_[ECU]___
____TT____________________CC
12._EET_399_[ECU]___
____TT__________________CTCC
13._EET_399_[ECU]___
____TT__________________CTCC
14._EET_399_[ECU]___
GGTT____AG____________CTCT__
15._EET_399_[ECU]___
________AG__________________
16._EET_399_[ECU]___
____CC__________________CTCT
17._EET_399_[ECU]___
CC__AA__AGAAGG__GGGGACAGAGGG
18._EET_399_[ECU]___
________AA__________________
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGGGCCTTCCGGGGACGGGTAGCTCG
1._EET_399_[ECU]___
TTGGGGCCTTCCGGGGACGGGTAGCTCG
2._EET_399_[ECU]___
TTGGGGCCTTCCGGGGACGGGTAGCTCG
3._EET_399_[ECU]___
TTGGGGCCTTCCGGGGACGGGTAGCTCG
4._EET_399_[ECU]___
TTGGGGCCTTCCGGGGACGGGTAGCTCG
5._EET_399_[ECU]___
TTGGGGCCTTCCGGGGACGGGTAGCTCG
6._EET_399_[ECU]___
TTGGGGCCTTCCGGGGACGGGTAGCTCG
7._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
8._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
9._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
10._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
11._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
12._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
13._EET_399_[ECU]___
____GG__TTCCGG__ACGGGT______
14._EET_399_[ECU]___
TT__GGCCTTCC__GGACGGGTAG____
15._EET_399_[ECU]___
__GG____________ACGGGTAG____
16._EET_399_[ECU]___
____CG__CTACGG__ACAGGT______
17._EET_399_[ECU]___
AAGGCCGGAACCGGGGACGGACAG____
18._EET_399_[ECU]___
__AA____________ACAAGGAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTCCGGACCCAGACCCCCAAACCTTT
1._EET_399_[ECU]___
AACTCCGGACCCAGACCCCCAAACCTTT
2._EET_399_[ECU]___
AACTCCGGACCCAGACCCCCAAACCTTT
3._EET_399_[ECU]___
AACTCCGGACCCAGACCCCCAAACCTTT
4._EET_399_[ECU]___
AACTCCGGACCCAG__CCCCAAACCTTT
5._EET_399_[ECU]___
AACTCCGGACCCAGACCCCCAAACCTTT
6._EET_399_[ECU]___
AACTCCGGACCCAGACCCCCAAACCTTT
7._EET_399_[ECU]___
AACT__________ACCC______CTTT
8._EET_399_[ECU]___
AACT__________ACCC______CTTT
9._EET_399_[ECU]___
AACT__________ACCC______CTTT
10._EET_399_[ECU]___
AACT__________ACCC______CTTT
11._EET_399_[ECU]___
AACT__________ACCC______CTTT
12._EET_399_[ECU]___
AACT____________CC______CTTT
13._EET_399_[ECU]___
AACT__________ACCC______CTTT
14._EET_399_[ECU]___
______________ACCC____ACCT__
15._EET_399_[ECU]___
AA____________ACCC____AC____
16._EET_399_[ECU]___
GGTT__________CCCG______CTCT
17._EET_399_[ECU]___
__AGCCGGACCC__ACGGGGAAACAGAA
18._EET_399_[ECU]___
AG____________CCGG____AA____
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
1._EET_399_[ECU]___
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
2._EET_399_[ECU]___
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
3._EET_399_[ECU]___
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
4._EET_399_[ECU]___
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
5._EET_399_[ECU]___
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
6._EET_399_[ECU]___
CCTTAGCCCCGGCTTTGGX_XX_XX_XX_XX_X
7._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
8._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
9._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
10._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
11._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
12._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
13._EET_399_[ECU]___
CC__AG__CCGGCT____X_XX_XX_XX_XX_X
14._EET_399_[ECU]___
____AGCCCCGG______X_XX_XX_XX_XX_X
15._EET_399_[ECU]___
CC____CC__GG______X_XX_XX_XX_XX_X
16._EET_399_[ECU]___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
17._EET_399_[ECU]___
__AA____GG__AGAAGGX_XX_XX_XX_XX_X
18._EET_399_[ECU]___
CT____CT__GT______X_XX_XX_XX_XX_X

Input profile: EET_399_[ECU] GC-04-047-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

3._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

6._EET_399_[ECU] GC-04-047-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

7._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

10._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

11._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

12._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

13._EET_399_[ECU] RUQ_745

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._EET_399_[ECU] RUQ_745

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._EET_399_[ECU] RUQ_745B

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

16._EET_399_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

54.5 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._EET_399_[ECU] RUQ_745

40.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240