SNP Profiles of EET-399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGGGCTCCCCCTGGCTCTTT
1._GC-04-047-3-11
AAAACTACAGGGCTCCCCCTGGCTCTTT
2._GC-04-047-3-11
AAAACTACAGGGCTCCCCCTGGCTCTTT
3._GC-04-047-3-11
AAAACTACAGGGCTCCCCCTGGCTCTTT
4._GC-04-047-3-11
AAAACTACAGGGCTCCCCCTGGCTCTTT
5._GC-04-047-3-11
AAAACTACAGGGCTCCCCCTGGCTCTTT
6._GC-04-047-3-11
AAAACTACAGGGCTCCCCCTGGCTCTTT
7._EET_399_[ECU]
AAAACTAC________CCCTGG__CT__
8._EET_399_[ECU]
AAAACTAC________CCCTGG__CT__
9._EET_399_[ECU]
AAAACTAC________CCCTGG__CT__
10._EET_399_[ECU]
AAAACTAC________CCCTGG__CT__
11._EET_399_[ECU]
AAAACTAC________CCCTGG__CT__
12._EET_399_[ECU]
AAAACTAC________CCCTGG__CT__
13._RUQ_745
AAACCTAC________CCCTGG__CT__
14._RUQ_745
____CTAC____CT__CC____CTTT__
15._RUQ_745B
______AC____CT______________
16._EET_399_[ECU]
AAAACTAC________CTCTGG__CC__
17._RUQ_745
AAAC__ACAGGG__GGGG__GGAGAGAA
18._RUQ_745
______CC____CT______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACGGCGGGCGCCAATTAGATAACGCG
1._GC-04-047-3-11
ATACGGCGGGCGCCAATTAGATAACGCG
2._GC-04-047-3-11
ATACGGCGGGCGCCAATTAGATAACGCG
3._GC-04-047-3-11
ATACGGCGGGCGCCAATTAGATAACGCG
4._GC-04-047-3-11
ATACGGCGGGCGCCAATTAGATAACGCG
5._GC-04-047-3-11
ATACGGCGGGCGCCAATTAGATAACGCG
6._GC-04-047-3-11
ATACGGCGGGCGCCAATTAGATAACGCG
7._EET_399_[ECU]
____GG____CG________ATAA__CG
8._EET_399_[ECU]
____GG____CG________ATAA__CG
9._EET_399_[ECU]
____GG____CG________ATAA__CG
10._EET_399_[ECU]
____GG____CG________ATAA__CG
11._EET_399_[ECU]
____GG____CG________ATAA__CG
12._EET_399_[ECU]
____GG____CG________ATAA__CG
13._RUQ_745
____GG____CG________ATAA__CG
14._RUQ_745
________GG____________AACCCG
15._RUQ_745B
____GGCT__________________CG
16._EET_399_[ECU]
____AA____GG________ATAT__CG
17._RUQ_745
ATACGGCG__CGGGAAAAAGATAACGCG
18._RUQ_745
____AATT__________________GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGGGCCAAGTGGGTAGCCGGCC
1._GC-04-047-3-11
AATTGTGGGGCCAAGTGGGTAGCCGGCC
2._GC-04-047-3-11
AATTGTGGGGCCAAGTGGGTAGCCGGCC
3._GC-04-047-3-11
AATTGTGGGGCCAAGTGGGTAGCCGGCC
4._GC-04-047-3-11
AATTGTGGGGCCAAGTGGGTAGCCGGCC
5._GC-04-047-3-11
AATTGTGGGGCCAAGTGGGTAGCCGGCC
6._GC-04-047-3-11
AATTGTGGGGCCAAGTGGGTAGCCGGCC
7._EET_399_[ECU]
AA______GG__AAGT____AG______
8._EET_399_[ECU]
AA______GG__AAGT____AG______
9._EET_399_[ECU]
AA______GG__AAGT____AG______
10._EET_399_[ECU]
AA______GG__AAGT____AG______
11._EET_399_[ECU]
AA______GG__AAGT____AG______
12._EET_399_[ECU]
AA______GG__AAGT____AG______
13._RUQ_745
AA______GG__AAGT____AG______
14._RUQ_745
______GGGGCCAAGT____AGCC____
15._RUQ_745B
________GG__AA________CC____
16._EET_399_[ECU]
AA______CC__AGGT____AG______
17._RUQ_745
AAAAACGGGGCCAAACCCACAGGGGGGG
18._RUQ_745
________CC__GG________CT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCACGGGGGTTTCTCC
1._GC-04-047-3-11
GGTTTTAGAGAACCACGGGGGTTTCTCC
2._GC-04-047-3-11
GGTTTTAGAGAACCACGGGGGTTTCTCC
3._GC-04-047-3-11
GGTTTTAGAGAACCACGGGGGTTTCTCC
4._GC-04-047-3-11
GGTTTTAGAGAACCACGGGGGTTTCTCC
5._GC-04-047-3-11
GGTTTTAGAGAACCACGGGGGTTT__CC
6._GC-04-047-3-11
GGTTTTAGAGAACCACGGGGGTTT__CC
7._EET_399_[ECU]
____TT__________________CTCC
8._EET_399_[ECU]
____TT__________________CTCC
9._EET_399_[ECU]
____TT____________________CC
10._EET_399_[ECU]
____TT____________________CC
11._EET_399_[ECU]
____TT__________________CTCC
12._EET_399_[ECU]
____TT__________________CTCC
13._RUQ_745
____TT__________________CTCC
14._RUQ_745
GGTT____AG____________CTCT__
15._RUQ_745B
________AG__________________
16._EET_399_[ECU]
____CC__________________CTCT
17._RUQ_745
CC__AA__AGAAGG__GGGGACAGAGGG
18._RUQ_745
________AA__________________
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGGGCCTTCCGGGGACGGGGGTAGCT
1._GC-04-047-3-11
TTGGGGCCTTCCGGGGACGGGGGTAGCT
2._GC-04-047-3-11
TTGGGGCCTTCCGGGGACGGGGGTAGCT
3._GC-04-047-3-11
TTGGGGCCTTCCGGGGACGGGGGTAGCT
4._GC-04-047-3-11
TTGGGGCCTTCCGGGGACGG__GTAGCT
5._GC-04-047-3-11
TTGGGGCCTTCCGGGGACGGGGGTAGCT
6._GC-04-047-3-11
TTGGGGCCTTCCGGGGACGGGGGTAGCT
7._EET_399_[ECU]
____GG__TTCCGG__ACGGGGGT____
8._EET_399_[ECU]
____GG__TTCCGG__ACGGGGGT____
9._EET_399_[ECU]
____GG__TTCCGG__ACGGGGGT____
10._EET_399_[ECU]
____GG__TTCCGG__ACGGGGGT____
11._EET_399_[ECU]
____GG__TTCCGG__ACGG__GT____
12._EET_399_[ECU]
____GG__TTCCGG__ACGGGGGT____
13._RUQ_745
____GG__TTCCGG__ACGGGGGT____
14._RUQ_745
TT__GGCCTTCC__GGACGGGGGTAG__
15._RUQ_745B
__GG____________ACGG__GTAG__
16._EET_399_[ECU]
____CG__CTACGG__ACAGGTGT____
17._RUQ_745
AAGGCCGGAACCGGGGACGGCCACAG__
18._RUQ_745
__AA____________ACAA__GGAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTCCGGACCCAGACCCCCAAACCT
1._GC-04-047-3-11
CGAACTCCGGACCCAGACCCCCAAACCT
2._GC-04-047-3-11
CGAACTCCGGACCCAGACCCCCAAACCT
3._GC-04-047-3-11
CGAACTCCGGACCCAG__CCCCAAACCT
4._GC-04-047-3-11
CGAACTCCGGACCCAGACCCCCAAACCT
5._GC-04-047-3-11
CGAACTCCGGACCCAGACCCCCAAACCT
6._GC-04-047-3-11
CGAACTCCGGACCCAGACCCCCAAACCT
7._EET_399_[ECU]
__AACT__________ACCC______CT
8._EET_399_[ECU]
__AACT__________ACCC______CT
9._EET_399_[ECU]
__AACT__________ACCC______CT
10._EET_399_[ECU]
__AACT__________ACCC______CT
11._EET_399_[ECU]
__AACT__________ACCC______CT
12._EET_399_[ECU]
__AACT____________CC______CT
13._RUQ_745
__AACT__________ACCC______CT
14._RUQ_745
________________ACCC____ACCT
15._RUQ_745B
__AA____________ACCC____AC__
16._EET_399_[ECU]
__GGTT__________CCCG______CT
17._RUQ_745
____AGCCGGACCC__ACGGGGAAACAG
18._RUQ_745
__AG____________CCGG____AA__
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
1._GC-04-047-3-11
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
2._GC-04-047-3-11
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
3._GC-04-047-3-11
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
4._GC-04-047-3-11
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
5._GC-04-047-3-11
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
6._GC-04-047-3-11
TTCCTTAGCCCCGGCTTTGGX_XX_XX_XX_X
7._EET_399_[ECU]
TTCC__AG__CCGGCT____X_XX_XX_XX_X
8._EET_399_[ECU]
TTCC__AG__CCGGCT____X_XX_XX_XX_X
9._EET_399_[ECU]
TTCC__AG__CCGGCT____X_XX_XX_XX_X
10._EET_399_[ECU]
TTCC__AG__CCGGCT____X_XX_XX_XX_X
11._EET_399_[ECU]
TTCC__AG__CCGGCT____X_XX_XX_XX_X
12._EET_399_[ECU]
TTCC__AG__CCGGCT____X_XX_XX_XX_X
13._RUQ_745
TTCC__AG__CCGGCT____X_XX_XX_XX_X
14._RUQ_745
______AGCCCCGG______X_XX_XX_XX_X
15._RUQ_745B
__CC____CC__GG______X_XX_XX_XX_X
16._EET_399_[ECU]
CTCT__AG__CTGTTT____X_XX_XX_XX_X
17._RUQ_745
AA__AA____GG__AGAAGGX_XX_XX_XX_X
18._RUQ_745
__CT____CT__GT______X_XX_XX_XX_X

Input profile: EET_399_[ECU] GC-04-047-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

1._EET_399_[ECU] GC-04-047-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._EET_399_[ECU] GC-04-047-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

6._EET_399_[ECU] GC-04-047-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

7._EET_399_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

10._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

11._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

12._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

13._EET_399_[ECU] RUQ_745

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._EET_399_[ECU] RUQ_745

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._EET_399_[ECU] RUQ_745B

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

16._EET_399_[ECU]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

53.8 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._EET_399_[ECU] RUQ_745

40.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240