SNP Profiles of OC 61 [VEN]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGAGTTCCTTCTGGTTCCCC
1._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
2._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
3._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
4._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
5._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
6._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
7._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
8._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
9._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
10._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
11._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
12._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
13._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
14._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
15._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
16._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
17._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
18._OC_61_[VEN]
ATAACCCC________TTCTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCCGGTTAGTTAGTTAACC
1._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
2._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
3._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
4._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
5._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
6._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
7._OC_61_[VEN]
______AA____GG________TTAA__
8._OC_61_[VEN]
______AA____GG________TTAA__
9._OC_61_[VEN]
______AA____GG________TTAA__
10._OC_61_[VEN]
______AA____GG________TTAA__
11._OC_61_[VEN]
______AA____GG________TTAA__
12._OC_61_[VEN]
______AA____GG________TTAA__
13._OC_61_[VEN]
______AA____GG________TTAA__
14._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
15._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
16._OC_61_[VEN]
______AA____GG________TTAA__
17._OC_61_[VEN]
______AA____GG________TTAA__
18._OC_61_[VEN]
______AA____GG________ATAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAATTGGAACCCCAGTTGGTTAACTAA
1._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
2._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
3._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
4._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
5._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
6._GC-05-040-1-40
CGAATT__AACCCCAGTTGGTTAACTAA
7._OC_61_[VEN]
CGAA______CC__AGTT____AA____
8._OC_61_[VEN]
CGAA______CC__AGTT____AA____
9._OC_61_[VEN]
CGAA______CC__AGTT____AA____
10._OC_61_[VEN]
CGAA______CC__AGTT____AA____
11._OC_61_[VEN]
CGAA______CC__AGTT____AA____
12._OC_61_[VEN]
CGAA______CC__AGTT____AA____
13._OC_61_[VEN]
CGAA______CC__AGTT____AA____
14._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
15._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
16._OC_61_[VEN]
CGAA______CC__AGTT____AA____
17._OC_61_[VEN]
CGAA______CC__AGTT____AA____
18._OC_61_[VEN]
CGAA______CG__AAGT____GG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTCCAGAGAACTCCGGGGGGTTCC
1._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
2._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
3._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
4._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
5._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
6._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
7._OC_61_[VEN]
______CC__________________CC
8._OC_61_[VEN]
______CC__________________CC
9._OC_61_[VEN]
______CC__________________CC
10._OC_61_[VEN]
______CC__________________CC
11._OC_61_[VEN]
______CC__________________CC
12._OC_61_[VEN]
______CC__________________CC
13._OC_61_[VEN]
______CC__________________CC
14._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
15._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
16._OC_61_[VEN]
______CC__________________CC
17._OC_61_[VEN]
______CC__________________CC
18._OC_61_[VEN]
______CC__________________TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
1._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
2._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
3._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
4._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
5._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
6._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
7._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
8._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
9._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
10._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
11._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
12._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
13._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
14._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGACAGTTGGGG
15._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGACAGTTGGGG
16._OC_61_[VEN]
TT____CG__CTAAGG__ACAGTTGG__
17._OC_61_[VEN]
TT____CG__CTAAGG__ACAGTTGG__
18._OC_61_[VEN]
CT________CTACGG__ACGGGTTT__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTACAGCCAAGGCCGGCTAACC
1._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
2._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
3._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
4._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
5._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
6._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
7._OC_61_[VEN]
____GGTT__________CCGG______
8._OC_61_[VEN]
____GGTT__________CCGG______
9._OC_61_[VEN]
____GGTT__________CCGG______
10._OC_61_[VEN]
____GGTT__________CCGG______
11._OC_61_[VEN]
____GGTT__________CCGG______
12._OC_61_[VEN]
____GGTT__________CCGG______
13._OC_61_[VEN]
____GGTT__________CCGG______
14._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
15._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
16._OC_61_[VEN]
____GGTT__________CCGG______
17._OC_61_[VEN]
____GGTT__________CCGG______
18._OC_61_[VEN]
____AGTT__________CCGG______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
1._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
2._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
3._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
4._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
5._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
6._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
7._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
8._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
9._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
10._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
11._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
12._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
13._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
14._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
15._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
16._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
17._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
18._OC_61_[VEN]
CTCT____AG__CTGTTT____X_XX_XX_X

Input profile: OC_61_[VEN] GC-05-039-1-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._OC_61_[VEN] GC-05-040-1-40

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._OC_61_[VEN] GC-05-040-1-40

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._OC_61_[VEN] GC-05-040-1-40

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._OC_61_[VEN] GC-05-039-1-39

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

5._OC_61_[VEN] GC-05-039-1-39

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

6._OC_61_[VEN] GC-05-040-1-40

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

8._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

9._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

10._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

11._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

12._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

13._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

14._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016

17._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

18._OC_61_[VEN]

67.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A C317 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240