SNP Profiles of MAN 15 /2 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	AC	GG	AG	CC	CC	CT	CT	GG	TT	CT	CT	AT
1._GC-05-072-2-23	AA	CC	AC	GG	AG	CC	CC	CT	CT	GG	TT	CT	CT	AT
2._GC-05-072-2-23	AA	CC	AC	GG	AG	CC	CC	CT	CT	GG	TT	CT	CT	AT
3._GC-05-072-2-23	AA	CC	AC	GG	AG	CC	CC	CT	CT	GG	TT	CT	CT	AT
4._GC-05-072-2-23	AA	CC	AC	GG	AG	CC	CC	CT	CT	GG	TT	CT	CT	AT
5._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
6._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
7._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
8._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
9._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
10._RUQ_86	__	CC	AC	__	__	CC	__	CT	__	__	TT	TT	__	__
11._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
12._MAN_15_/2_[BRA]	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
13._RUQ_86	AA	CC	AC	__	__	__	__	CT	CT	GG	__	CT	__	__
14._RUQ_86	__	__	AC	__	__	CC	__	__	__	__	__	__	__	__
15._MAN15/2[BRA]	__	__	AC	__	__	__	__	CT	__	__	__	CT	__	__
16._MAN_15_/2_[BRA]	__	CT	AA	__	__	__	__	CC	CC	GG	__	CC	__	__
17._RUQ_86	AA	__	AC	GG	GG	__	GG	AG	__	GG	AA	AG	AG	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	GG	CC	GG	CT	AA	TT	GG	AT	AA	CG	GG
1._GC-05-072-2-23	CC	AA	GG	GG	CC	GG	CT	AA	TT	GG	AT	AA	CG	GG
2._GC-05-072-2-23	CC	AA	GG	GG	CC	GG	CT	AA	TT	GG	AT	AA	CG	GG
3._GC-05-072-2-23	CC	AA	GG	GG	CC	GG	CT	AA	TT	GG	AT	AA	CG	GG
4._GC-05-072-2-23	CC	AA	GG	GG	CC	GG	CT	AA	TT	GG	AT	AA	CG	GG
5._MAN_15_/2_[BRA]	__	__	GG	__	__	GG	__	__	__	__	AT	AA	__	GG
6._MAN_15_/2_[BRA]	__	__	GG	__	__	GG	__	__	__	__	AT	AA	__	GG
7._MAN_15_/2_[BRA]	__	__	GG	__	__	GG	__	__	__	__	AT	AA	__	GG
8._MAN_15_/2_[BRA]	__	__	GG	__	__	GG	__	__	__	__	AT	AA	__	GG
9._MAN_15_/2_[BRA]	__	__	GG	__	__	GG	__	__	__	__	AT	AA	__	GG
10._RUQ_86	__	__	__	__	CC	__	__	__	__	GG	__	AA	__	GG
11._MAN_15_/2_[BRA]	__	__	AG	__	__	GG	__	__	__	__	AT	AA	__	GG
12._MAN_15_/2_[BRA]	__	__	AG	__	__	GG	__	__	__	__	AT	AA	__	GG
13._RUQ_86	__	__	AG	__	__	GG	__	__	__	__	AT	AA	__	GG
14._RUQ_86	__	__	AG	TT	__	__	__	__	__	__	__	__	__	GG
15._MAN15/2[BRA]	__	AG	__	__	GG	__	CT	__	__	GG	__	AA	CC	CC
16._MAN_15_/2_[BRA]	__	__	AA	__	__	GG	__	__	__	__	TT	AA	__	GG
17._RUQ_86	AC	AG	AG	CC	__	GG	AG	AA	AA	GG	AT	AA	CG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	AG	CG	CC	AA	GT	GG	GT	AA	CT	GG	CC
1._GC-05-072-2-23	AA	TT	GG	AG	CG	CC	AA	GT	GG	GT	AA	CT	GG	CC
2._GC-05-072-2-23	AA	TT	GG	AG	CG	CC	AA	GT	GG	GT	AA	CT	GG	CC
3._GC-05-072-2-23	AA	TT	GG	AG	CG	CC	AA	GT	GG	GT	AA	CT	GG	CC
4._GC-05-072-2-23	AA	TT	GG	AG	CG	CC	AA	GT	GG	GT	AA	CT	GG	CC
5._MAN_15_/2_[BRA]	AA	__	__	__	CG	__	AA	GT	__	__	AA	__	__	__
6._MAN_15_/2_[BRA]	AA	__	__	__	CG	__	AA	GT	__	__	AA	__	__	__
7._MAN_15_/2_[BRA]	AA	__	__	__	CG	__	AA	GT	__	__	AA	__	__	__
8._MAN_15_/2_[BRA]	AA	__	__	__	CG	__	AA	GT	__	__	AA	__	__	__
9._MAN_15_/2_[BRA]	AA	__	__	__	CG	__	AA	GT	__	__	AA	__	__	__
10._RUQ_86	__	__	__	AG	CG	CC	AA	GT	__	__	AA	CT	__	__
11._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	AA	GT	__	__	AA	__	__	__
12._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	AA	GT	__	__	AA	__	__	__
13._RUQ_86	AA	__	__	__	GG	__	AA	GT	__	__	AG	__	__	__
14._RUQ_86	__	__	__	__	GG	__	AA	__	__	__	__	CT	__	__
15._MAN15/2[BRA]	__	__	__	AG	CG	__	__	__	__	GT	__	CT	__	__
16._MAN_15_/2_[BRA]	AA	__	__	__	CG	__	AA	GG	__	__	AA	__	__	__
17._RUQ_86	AA	AA	CC	AG	CG	CC	AA	AC	CC	AC	AA	AG	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AA	AG	AA	CC	AC	GG	AG	GT	TT	CC	CC
1._GC-05-072-2-23	GG	TT	TT	AA	AG	AA	CC	AC	GG	AG	GT	TT	CC	CC
2._GC-05-072-2-23	GG	TT	TT	AA	AG	AA	CC	AC	GG	AG	GT	TT	CC	CC
3._GC-05-072-2-23	GG	TT	TT	AA	AG	AA	CC	AC	GG	AG	GT	TT	CC	CC
4._GC-05-072-2-23	GG	TT	TT	AA	AG	AA	CC	AC	GG	AG	GT	TT	CC	CC
5._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
6._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
7._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
8._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
9._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
10._RUQ_86	GG	TT	__	__	AG	__	__	__	__	__	__	CT	CT	__
11._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
12._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
13._RUQ_86	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
14._RUQ_86	__	__	__	__	AG	__	__	__	__	__	__	__	__	__
15._MAN15/2[BRA]	__	TT	__	AA	__	__	__	__	__	__	__	__	CT	__
16._MAN_15_/2_[BRA]	__	__	TT	__	__	__	__	__	__	__	__	__	CT	__
17._RUQ_86	CC	__	AA	__	AG	AA	GG	__	GG	AA	AC	AG	AG	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CG	CT	CC	AA	GG	GG	CC	AA	GT	GG	AG	CC
1._GC-05-072-2-23	TT	GG	CG	CT	CC	AA	GG	GG	CC	AA	GT	GG	AG	CC
2._GC-05-072-2-23	TT	GG	CG	CT	CC	AA	GG	GG	CC	AA	GT	GG	AG	CC
3._GC-05-072-2-23	TT	GG	CG	CT	CC	AA	GG	GG	CC	AA	GT	GG	AG	CC
4._GC-05-072-2-23	TT	GG	CG	CT	CC	AA	GG	GG	CC	AA	GT	GG	AG	CC
5._MAN_15_/2_[BRA]	__	__	CG	__	CC	AA	GG	__	CC	AA	GT	GG	__	__
6._MAN_15_/2_[BRA]	__	__	CG	__	CC	AA	GG	__	CC	AA	GT	GG	__	__
7._MAN_15_/2_[BRA]	__	__	CG	__	CC	AA	GG	__	CC	AA	GT	GG	__	__
8._MAN_15_/2_[BRA]	__	__	CG	__	CC	AA	GG	__	CC	AA	GT	GG	__	__
9._MAN_15_/2_[BRA]	__	__	CG	__	CC	AA	GG	__	CC	AA	GT	GG	__	__
10._RUQ_86	TT	__	CG	CT	CC	AC	__	GG	CC	AG	GT	GG	AG	__
11._MAN_15_/2_[BRA]	__	__	CG	__	CC	AC	GG	__	CC	AG	GT	GG	__	__
12._MAN_15_/2_[BRA]	__	__	CG	__	CC	AC	GG	__	CC	AG	GT	GG	__	__
13._RUQ_86	__	__	CG	__	CC	AC	GG	__	CC	AG	GT	GG	__	__
14._RUQ_86	__	AG	__	__	__	__	__	__	CC	AG	__	GG	AG	__
15._MAN15/2[BRA]	__	__	CG	CT	__	AC	__	GG	CC	AG	__	__	__	__
16._MAN_15_/2_[BRA]	__	__	CG	__	CC	AC	GG	__	CC	GG	TT	GG	__	__
17._RUQ_86	AA	AG	CG	AG	GG	AC	GG	GG	CC	AG	AC	CC	AG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CG	AA	CT	CC	AG	AC	AC	AG	AC	CG	CC	AA	AC	CC
1._GC-05-072-2-23	CG	AA	CT	CC	AG	AC	AC	AG	AC	CG	CC	AA	AC	CC
2._GC-05-072-2-23	CG	AA	CT	CC	AG	AC	AC	AG	AC	CG	CC	AA	AC	CC
3._GC-05-072-2-23	CG	AA	CT	CC	AG	AC	AC	AG	AC	CG	CC	AA	AC	CC
4._GC-05-072-2-23	CG	AA	CT	CC	AG	AC	AC	AG	AC	CG	CC	AA	AC	CC
5._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
6._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
7._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
8._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
9._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
10._RUQ_86	__	__	__	__	__	__	__	__	AC	CG	__	__	AC	CC
11._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
12._MAN_15_/2_[BRA]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
13._RUQ_86	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	CC
14._RUQ_86	__	AA	__	__	__	__	__	__	AC	CG	__	__	AC	__
15._MAN15/2[BRA]	CG	__	__	__	__	__	__	__	__	CG	__	__	__	__
16._MAN_15_/2_[BRA]	__	AA	TT	__	__	__	__	__	CC	GG	__	__	__	CT
17._RUQ_86	__	__	AG	CC	AG	AC	AC	__	AC	CG	GG	AA	AC	GG

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	TT	TT	AG	CC	TT	GT	CT	AT	GG	X_X	X_X	X_X	X_X
1._GC-05-072-2-23	CT	TT	TT	AG	CC	TT	GT	CT	AT	GG	X_X	X_X	X_X	X_X
2._GC-05-072-2-23	CT	TT	TT	AG	CC	TT	GT	CT	AT	GG	X_X	X_X	X_X	X_X
3._GC-05-072-2-23	CT	TT	TT	AG	CC	TT	GT	CT	AT	GG	X_X	X_X	X_X	X_X
4._GC-05-072-2-23	CT	TT	TT	AG	CC	TT	GT	CT	AT	GG	X_X	X_X	X_X	X_X
5._MAN_15_/2_[BRA]	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
6._MAN_15_/2_[BRA]	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
7._MAN_15_/2_[BRA]	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
8._MAN_15_/2_[BRA]	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
9._MAN_15_/2_[BRA]	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
10._RUQ_86	__	__	__	AG	CC	TT	__	__	__	__	X_X	X_X	X_X	X_X
11._MAN_15_/2_[BRA]	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
12._MAN_15_/2_[BRA]	__	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
13._RUQ_86	CT	TT	__	AG	__	TT	GT	CT	__	__	X_X	X_X	X_X	X_X
14._RUQ_86	__	TT	__	__	CC	__	GT	__	__	__	X_X	X_X	X_X	X_X
15._MAN15/2[BRA]	CT	__	__	__	__	__	__	__	__	__	X_X	X_X	X_X	X_X
16._MAN_15_/2_[BRA]	TT	__	__	AA	__	CC	TT	__	__	__	X_X	X_X	X_X	X_X
17._RUQ_86	AG	__	AA	__	__	AA	AA	AG	AT	GG	X_X	X_X	X_X	X_X

Input profile: MAN_15_/2_[BRA] GC-05-072-2-23

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

1._MAN_15_/2_[BRA] GC-05-072-2-23

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

2._MAN_15_/2_[BRA] GC-05-072-2-23

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

3._MAN_15_/2_[BRA] GC-05-072-2-23

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

4._MAN_15_/2_[BRA] GC-05-072-2-23

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

6._MAN_15_/2_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

7._MAN_15_/2_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

8._MAN_15_/2_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

9._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

10._MAN_15_/2_[BRA] RUQ_86

93.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

12._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

13._MAN_15_/2_[BRA] RUQ_86

92.3 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

14._MAN_15_/2_[BRA] RUQ_86

85.7 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

15._MAN_15_/2_[BRA] MAN15/2[BRA]

82.7 %
26 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

16._MAN_15_/2_[BRA]

67.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

49.4 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240