SNP Profiles of EET 233   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCACGGGGCCCCCCCCGGTTCTTT
1._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
2._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
3._IMC_67___
AACCCCACGGGGCC__CCCCGGTTCTTT
4._IMC_67___
AACCCCAC__GGCCCCCCCCGGTTCTTT
5._IMC_67___
AACCCCAC________CCCCGG__CT__
6._IMC_67___
AACCCCAC________CCCCGG__CT__
7._IMC_67___
AACCCCAC________CCCCGG__CT__
8._IMC_67___
AACCCCAC________CCCCGG__CT__
9._IMC_67___
AACCCCAC________CCCCGG__CT__
10._IMC_67___
AACCCCAC________CCCCGG__CT__
11._IMC_67___
AACCCCAC________CCCCGG__CT__
12._IMC_67___
AACCCCAC________CCCCGG__CT__
13._IMC_67___
AACCCCAC________CCCCGG__CT__
14._IMC_67___
AACCCCAC________CCCCGG__CT__
15._IMC_67___
AACCCCAC________CCCCGG__CT__
16._IMC_67___
____CCAC____TT__CC____TTTT__
17._IMC_67___
______AC____TT______________
18._IMC_67___
______AC________CC______CC__
19._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
20._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
21._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
22._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
23._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCTAATTGGTTAACCCC
1._IMC_67___
AAAAGGCGCCGGCTAATTGGTTAACCCC
2._IMC_67___
AAAAGGCGCCGGCTAATTGGTT__CCCC
3._IMC_67___
AAAAGGCGCCGGCTAATTGGTTAACCCC
4._IMC_67___
AAAAGGCGCCGGCTAATTGGTT__CCCC
5._IMC_67___
____GG____GG________TTAA__CC
6._IMC_67___
____GG____GG________TTAA__CC
7._IMC_67___
____GG____GG________TTAA__CC
8._IMC_67___
____GG____GG________TTAA__CC
9._IMC_67___
____GG____GG________TTAA__CC
10._IMC_67___
____GG____GG________TTAA__CC
11._IMC_67___
____GG____GG________TT____CC
12._IMC_67___
____GG____GG________TT____CC
13._IMC_67___
____GG____GG________TTAA__CC
14._IMC_67___
____GG____GG________TTAA__CC
15._IMC_67___
____GG____GG________TTAA__CC
16._IMC_67___
________CC________GG__AACCCC
17._IMC_67___
____GGTT__________________CC
18._IMC_67___
________GG__CT____GG__ATCCCG
19._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
20._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
21._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
22._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
23._IMC_67___
AAACGGGG__CGGGAAAGGGAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAAGTGGTTAGCCGGCC
1._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
2._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
3._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
4._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
5._IMC_67___
AA______GG__AAGT____AG______
6._IMC_67___
AA______GG__AAGT____AG______
7._IMC_67___
AA______GG__AAGT____AG______
8._IMC_67___
AA______GG__AAGT____AG______
9._IMC_67___
AA______GG__AAGT____AG______
10._IMC_67___
AA______GG__AAGT____AG______
11._IMC_67___
AA______GG__AAGT____AG______
12._IMC_67___
AA______GG__AAGT____AG______
13._IMC_67___
AA______GG__AAGT____AG______
14._IMC_67___
AA______GG__AGGT____AG______
15._IMC_67___
AA______GG__AGGT____AG______
16._IMC_67___
______GGCGCCAAGT____AGCC____
17._IMC_67___
________GG__AA________CC____
18._IMC_67___
______GGGG________GT__CC____
19._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
20._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
21._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
22._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
23._IMC_67___
ATAAAAGGGGACAACCCCAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCCCGGAGGTTTCTCC
1._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
2._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
3._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
4._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
5._IMC_67___
____TT__________________CTCC
6._IMC_67___
____TT__________________CTCC
7._IMC_67___
____TT__________________CTCC
8._IMC_67___
____TT__________________CTCC
9._IMC_67___
____TT__________________CTCC
10._IMC_67___
____TT__________________CTCC
11._IMC_67___
____TT__________________CTCC
12._IMC_67___
____TT__________________CTCC
13._IMC_67___
____TT__________________CTCC
14._IMC_67___
____TT__________________CTCC
15._IMC_67___
____TT__________________CTCC
16._IMC_67___
GGTT____AA____________TTCT__
17._IMC_67___
________AA__________________
18._IMC_67___
__TT__AA________________CT__
19._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
20._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
21._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
22._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
23._IMC_67___
CC__AA__AGAGAG__GGAGACGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTACGGGGCCAGGTGGGGTT
1._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
2._IMC_67___
TT__CGCCTTACGGGGCCAGGTGGGGTT
3._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
4._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
5._IMC_67___
____CG__TTACGG__CCAGGTGG____
6._IMC_67___
____CG__TTACGG__CCAGGTGG____
7._IMC_67___
____CG__TTACGG__CCAGGTGG____
8._IMC_67___
____CG__TTACGG__CCAGGTGG____
9._IMC_67___
____CG__TTACGG__CCAGGTGG____
10._IMC_67___
____CG__TTACGG__CCAGGTGG____
11._IMC_67___
____CG__TTACGG__CCAGGTGG____
12._IMC_67___
____CG__TTACGG__CCAGGTGG____
13._IMC_67___
____CG__TTACGG__CCAGGTGG____
14._IMC_67___
____CG__TTACGG__CCAGGTGG____
15._IMC_67___
____CG__TTACGG__CCAGGTGG____
16._IMC_67___
TT__CGCCTTAC__GGCCAGGTGGGG__
17._IMC_67___
__GG____________CCAG__GGGG__
18._IMC_67___
____GGCC__AC__GGAAAA________
19._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
20._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
21._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
22._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
23._IMC_67___
AAGGGGGGAGCCCGGGACGGCCCCAA__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACCAAAAACACAGACGGCCATCCCC
1._IMC_67___
CG__CCAA__ACACAGACGGCCATCCCC
2._IMC_67___
CGAACCAAAAACACAGACGGCCATCCCC
3._IMC_67___
__AACCAAAAACACAGACGGCCATCCCC
4._IMC_67___
CGAACCAAAAACACAGACGGCCATCCCC
5._IMC_67___
__AACC__________ACGG______CC
6._IMC_67___
__AACC__________ACGG______CC
7._IMC_67___
__AACC__________ACGG______CC
8._IMC_67___
__AACC__________ACGG______CC
9._IMC_67___
__AACC__________ACGG______CC
10._IMC_67___
__AACC__________ACGG______CC
11._IMC_67___
__AACC__________ACGG______CC
12._IMC_67___
__AACC__________ACGG______CC
13._IMC_67___
____CC__________ACGG______CC
14._IMC_67___
__AACC__________ACGG______CC
15._IMC_67___
__AACC__________ACGG______CC
16._IMC_67___
________________ACGG____CCCC
17._IMC_67___
__AA____________ACGG____CC__
18._IMC_67___
CG________________CG________
19._IMC_67___
____GGAAAAACAC__ACCCGGATCCGG
20._IMC_67___
____GGAAAAACAC__ACCCGGATCCGG
21._IMC_67___
____GGAAAAACAC__ACCCGGATCCGG
22._IMC_67___
____GGAAAAACAC__ACCCGGATCCGG
23._IMC_67___
____AACCGGAACC__CCGGGGATCCAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
1._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
2._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
3._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
4._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
5._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
6._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
7._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
8._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
9._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
10._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
11._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
12._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
13._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
14._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
15._IMC_67___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
16._IMC_67___
______AACCCTGT______X_XX_XX_XX_X
17._IMC_67___
__CC____CC__GT______X_XX_XX_XX_X
18._IMC_67___
CC__________________X_XX_XX_XX_X
19._IMC_67___
AA__AG____AGACAGAAGGX_XX_XX_XX_X
20._IMC_67___
AA__AG____AGACAGAAGGX_XX_XX_XX_X
21._IMC_67___
AA__AG____AGACAGAAGGX_XX_XX_XX_X
22._IMC_67___
AA__AG____AGACAGAAGGX_XX_XX_XX_X
23._IMC_67___
AG__AG____AGAAAGAAGGX_XX_XX_XX_X

Input profile: IMC_67 GC-05-082-2-33

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._IMC_67 GC-05-82-2-33

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

3._IMC_67 GC-05-82-2-33

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

4._IMC_67 GC-05-82-2-33

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

5._IMC_67

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

6._IMC_67

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

7._IMC_67

identical
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._IMC_67

identical
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

9._IMC_67

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

10._IMC_67

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

11._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016

12._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

13._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._IMC_67

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

16._IMC_67 RUQ_1056

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._IMC_67 RUQ_1056

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._IMC_67 IMC67

70 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

50.6 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

50.6 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

40 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240