SNP Profiles of GU-175 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
1._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
2._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
3._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
4._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
5._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
6._GC-05-097-2-48	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
7._GC-05-097-2-48	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
8._GC-05-097-2-48	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
9._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
10._GC-01-100-5-17	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	TT	CC	TT	AA
11._GC-01-100-5-17	AA	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA	TT
12._MITC-000401	AA	__	AA	GG	GG	__	GG	GG	__	GG	AA	GG	AA	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
1._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
2._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
3._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
4._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
5._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
6._GC-05-097-2-48	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
7._GC-05-097-2-48	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
8._GC-05-097-2-48	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
9._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
10._GC-01-100-5-17	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
11._GC-01-100-5-17	CC	GG	CC	__	GG	AA	AA	AA	GG	TT	AA	GG	CC	AA
12._MITC-000401	CC	AA	CC	__	CG	AA	AG	AA	AG	TT	AT	CG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
1._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
2._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
3._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
4._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
5._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
6._GC-05-097-2-48	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
7._GC-05-097-2-48	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
8._GC-05-097-2-48	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
9._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
10._GC-01-100-5-17	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
11._GC-01-100-5-17	AA	AA	GG	CC	CC	AA	AA	__	CC	GG	GG	AG	GG	CC
12._MITC-000401	AA	CC	GG	CC	CC	AG	AC	CC	AA	AA	AA	AG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
1._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
2._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
3._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
4._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
5._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
6._GC-05-097-2-48	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
7._GC-05-097-2-48	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
8._GC-05-097-2-48	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
9._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
10._GC-01-100-5-17	TT	TT	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
11._GC-01-100-5-17	__	AA	GG	AA	GG	__	GG	GG	AA	AA	AA	GG	AA	GG
12._MITC-000401	__	GG	GG	AA	GG	__	AG	GG	AA	AG	GG	AA	AA	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
1._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
2._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
3._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
4._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
5._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
6._GC-05-097-2-48	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
7._GC-05-097-2-48	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
8._GC-05-097-2-48	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
9._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
10._GC-01-100-5-17	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
11._GC-01-100-5-17	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	__	__	__
12._MITC-000401	CG	AA	GG	AA	GG	AG	CC	AG	AA	CC	GG	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
1._GC-01-100-5-17	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
2._GC-01-100-5-17	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
3._GC-01-100-5-17	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
4._GC-01-100-5-17	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
5._GC-01-100-5-17	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
6._GC-05-097-2-48	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
7._GC-05-097-2-48	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
8._GC-05-097-2-48	CC	AC	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
9._GC-01-100-5-17	CC	AC	AG	CC	CC	GG	AA	GG	__	TT	AA	CC	CC	CC
10._GC-01-100-5-17	CC	__	AG	CC	CC	GG	AA	GG	CC	TT	AA	CC	CC	CC
11._GC-01-100-5-17	GG	AC	AG	CC	CC	__	AA	CC	GG	TT	AA	GG	GG	__
12._MITC-000401	AA	AC	AG	CC	AA	__	CC	CC	GG	TT	AC	AG	AA	__

	85	86	87	88	89	90	91	92
_Input profile	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-05-097-2-48	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-05-097-2-48	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-05-097-2-48	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-100-5-17	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-100-5-17	GG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
12._MITC-000401	AA	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_175 GC-05-097-2-48

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

1._GU_175 GC-01-100-5-17

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

2._GU_175 GC-01-100-5-17

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Mars, 2018

3._GU_175 GC-01-100-5-17

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

Mars, 2018

4._GU_175 GC-01-100-5-17

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

Mars, 2018

5._GU_175 GC-01-100-5-17

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

Mars, 2018

6._GU_175 GC-05-097-2-48

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

7._GU_175 GC-05-097-2-48

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

Mars, 2018

8._GU_175 GC-05-097-2-48

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

9._GU_175 GC-01-100-5-17

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

Mars, 2018

10._GU_175 GC-01-100-5-17

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

Mars, 2018

11._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 17, Tree: 6

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

12._GU_175 MITC-000401

34.2 %
79 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240

SNP Profiles of GU-175 View Data

Show/Hide Profiles

Input profile: GU_175 GC-05-097-2-48

1._GU_175 GC-01-100-5-17

identical 92 shared markers

2._GU_175 GC-01-100-5-17

identical 92 shared markers

3._GU_175 GC-01-100-5-17

identical 92 shared markers

4._GU_175 GC-01-100-5-17

identical 92 shared markers

5._GU_175 GC-01-100-5-17

identical 92 shared markers

6._GU_175 GC-05-097-2-48

identical 92 shared markers

7._GU_175 GC-05-097-2-48

identical 92 shared markers

8._GU_175 GC-05-097-2-48

identical 92 shared markers

9._GU_175 GC-01-100-5-17

identical 91 shared markers

10._GU_175 GC-01-100-5-17

identical 91 shared markers

11._GU_175 GC-01-100-5-17

48.7 % 78 shared markers

12._GU_175 MITC-000401

34.2 % 79 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

identical
91 shared markers

identical
91 shared markers

48.7 %
78 shared markers

34.2 %
79 shared markers