SNP Profiles of ICS 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
6._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
7._ICS_48___
AAAACTACAGAGCTCCCTCTGGCTCCCT
8._ICS_48___
AAAACTAC________CTCTGG__CC__
9._ICS_48___
AAAACTAC________CTCTGG__CC__
10._ICS_48___
AAAACTAC________CTCTGG__CC__
11._ICS_48___
AAAACTAC________CTCTGG__CC__
12._ICS_48___
AAAACTAC________CTCTGG__CC__
13._ICS_48___
AAAACTAC________CTCTGG__CC__
14._ICS_48___
AAAACTAC________CTCTGG__CC__
15._ICS_48___
AAAACTAC________CTCTGG__CC__
16._ICS_48___
AAAACTAC________CTCTGG__CC__
17._ICS_48___
ATAACTAC________CTCTGG__CC__
18._ICS_48___
AAAACTAC________CTCTGG__CC__
19._ICS_48___
____CTAA____CC__CT____CTCC__
20._ICS_48___
______AC____CC______________
21._ICS_48___
AAAATTCC________CCCCGG__CC__
22._ICS_48___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
23._ICS_48___
AAAA__ACAGAG__GGAG__GGAGGGAG
24._ICS_48___
ATAC__ACAGAG__AGGG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._ICS_48___
ATCCAAAAGGCGGGCTAGTTAGATATCG
8._ICS_48___
______AA____GG________ATAT__
9._ICS_48___
______AA____GG________ATAT__
10._ICS_48___
______AA____GG________ATAT__
11._ICS_48___
______AA____GG________ATAT__
12._ICS_48___
______AA____GG________ATAT__
13._ICS_48___
______AA____GG________ATAT__
14._ICS_48___
______AA____GG________ATAT__
15._ICS_48___
______AA____GG________ATAT__
16._ICS_48___
______AA____GG________ATAT__
17._ICS_48___
______AA____GG________ATAT__
18._ICS_48___
______AA____CG________ATAT__
19._ICS_48___
__________CG________AG__ATCG
20._ICS_48___
______AATT__________________
21._ICS_48___
______AA____GG________TTAA__
22._ICS_48___
ATCC__AAGGCCGGTTAATTGGTTAACC
23._ICS_48___
ATCCAGAACC__GGAGAAAAAGATATCG
24._ICS_48___
TTCCAGAGCG__GGAGAGAGGGATATGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCGACAAGTGGGTAGCCAA
1._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCCAA
2._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCCAA
3._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCCAA
4._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCCAA
5._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCCAA
6._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCCAA
7._ICS_48___
CGAACTGTAGCGACAAGTGGGTAGCC__
8._ICS_48___
CGAA______CG__AAGT____AG____
9._ICS_48___
CGAA______CG__AAGT____AG____
10._ICS_48___
CGAA______CG__AAGT____AG____
11._ICS_48___
CGAA______CG__AAGT____AG____
12._ICS_48___
CGAA______CG__AAGT____AG____
13._ICS_48___
CGAA______CG__AAGT____AG____
14._ICS_48___
CGAA______CG__AAGT____AG____
15._ICS_48___
CGAA______CG__AAGT____AG____
16._ICS_48___
CGAA______CG__AAGT____AG____
17._ICS_48___
CGAA______CG__AAGT____AG____
18._ICS_48___
CGAA______CG__AAGT____AG____
19._ICS_48___
CG______AGGGACAAGT____AGCC__
20._ICS_48___
CG________CG__AA________CC__
21._ICS_48___
GGAA______CG__AATT____AA____
22._ICS_48___
GGAATTGGAGCGCCAATTGGTTAATTAA
23._ICS_48___
CGAAAGACAGCGACAAACCCACAGGGAA
24._ICS_48___
CCATAAACGGCCCCAGACACAAAGAGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGAGAGCTCCGGGGGGTTCT
1._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
2._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
3._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
4._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
5._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
6._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
7._ICS_48___
CCGTATCCAGAGAGCTCCGGGGGGTTCT
8._ICS_48___
______CC__________________CT
9._ICS_48___
______CC__________________CT
10._ICS_48___
______CC__________________CT
11._ICS_48___
______CC__________________CT
12._ICS_48___
______CC__________________CT
13._ICS_48___
______CC__________________CT
14._ICS_48___
______CC__________________CT
15._ICS_48___
______CC__________________CT
16._ICS_48___
______CC__________________CT
17._ICS_48___
______CC__________________CT
18._ICS_48___
______CC__________________CT
19._ICS_48___
__GTAT____AG____________CTCT
20._ICS_48___
__________AG________________
21._ICS_48___
______CC__________________CC
22._ICS_48___
CCGGTTCCAAGGAACCCCGGGGTTTTCC
23._ICS_48___
GGAC__GG__AGAGAG__GGGGCCAGAG
24._ICS_48___
GGCC__AG__GGAAAG__GGAGACAAAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTGGCGCTCTACGGAGACAGGTTTAG
1._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
2._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
3._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
4._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
5._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
6._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
7._ICS_48___
CTGTGGCGCTCTACGGAGACAGGTTTAG
8._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
9._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
10._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
11._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
12._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
13._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
14._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
15._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
16._ICS_48___
CT____CG__CTACGG__ACAGGTTT__
17._ICS_48___
CT________CTACGG__ACAGGTTT__
18._ICS_48___
CT____GG__CTACGG__ACAGGTTT__
19._ICS_48___
__GTGGCGCTCTAC__AGACAGGTTTAG
20._ICS_48___
____GG____________ACAG__TTAG
21._ICS_48___
TT____CC__CTAAGG__CCAGTTGT__
22._ICS_48___
TTTTAGCCTTCTAAGGGGCCAGTTGTGG
23._ICS_48___
AGACGGCGAGAGACGGAGACAGACAAAG
24._ICS_48___
AGAAAAGGAGAGACGGGGCCAAACCCAG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCTTACAGACAAAGCCCGCTATACCT
1._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
2._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
3._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
4._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
5._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
6._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
7._ICS_48___
CCCCTTACAGACAAAGCCCGCTATACCT
8._ICS_48___
____TT__________CCCG______CT
9._ICS_48___
____TT__________CCCG______CT
10._ICS_48___
____TT__________CCCG______CT
11._ICS_48___
____TT__________CCCG______CT
12._ICS_48___
____TT__________CCCG______CT
13._ICS_48___
____TT__________CCCG______CT
14._ICS_48___
____TT__________CCCG______CT
15._ICS_48___
____TT__________CCCG______CT
16._ICS_48___
____TT__________CCCG______CT
17._ICS_48___
____TT__________CCGG______CT
18._ICS_48___
____TT__________CCGG______CT
19._ICS_48___
________________CCCG____ACCT
20._ICS_48___
________________CCCG____AC__
21._ICS_48___
____TT__________CCGG______TT
22._ICS_48___
TTCCTTACAACCAAAACCGGCCATCCTT
23._ICS_48___
____AAACAGACAA__CCCCAGATACAG
24._ICS_48___
____AGCCAGACAC__ACCGGGATACAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
1._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
2._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
3._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
4._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
5._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
6._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
7._ICS_48___
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
8._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
9._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
10._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
11._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
12._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
13._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
14._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
15._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
16._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
17._ICS_48___
CT____AG__CTGTTT____X_XX_XX_XX_X
18._ICS_48___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
19._ICS_48___
______AGCCCTGT______X_XX_XX_XX_X
20._ICS_48___
__CT____CC__GT______X_XX_XX_XX_X
21._ICS_48___
TTTT__AA__CTTTTT____X_XX_XX_XX_X
22._ICS_48___
TTTTTTAATTCTTTTTAAGGX_XX_XX_XX_X
23._ICS_48___
AG__AA____AGAAAAATGGX_XX_XX_XX_X
24._ICS_48___
AG__AG____AGACAGTTGGX_XX_XX_XX_X

Input profile: ICS_48 GC-05-120-3-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._ICS_48 GC-05-078-2-29

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._ICS_48 GC-05-078-2-29

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._ICS_48 GC-05-078-2-29

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

7._ICS_48 GC-05-078-2-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

9._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016

10._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

11._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

12._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

13._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

14._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

15._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

16._ICS_48 RUQ_146

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_48

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

18._ICS_48

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

19._ICS_48 RUQ_146

95.3 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._ICS_48 RUQ_146

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

22._ICS_48 GC-05-078-2-29

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._ICS_48 RUQ_146

54.9 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_48 ICS_48_Fld#_105_Plt#_2

40.7 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240