SNP Profiles of CCN-51   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTCCGGAGCCCCCTCCGGTTCCCT
1._CCN_51___
AAACCTCCGGAGCCCCCTCCGGTTCCCT
2._CCN_51___
AAACCTCCGGAGCCCCCTCCGGTTCCCT
3._CCN_51___
AAACCTCCGGAGCCCCCTCCGGTTCCCT
4._CCN_51___
AAACCTCCGGAGCCCCCTCCGGTTCCCT
5._CCN_51___
AAACCTCCGGAGCCCCCTCCGGTTCCCT
6._CCN_51___
AAACCTCCGGAGCCCCCTCCGG__CCCT
7._CCN_51___
AAACCT__GG____CCCTCCGGTTCCCT
8._CCN_51___
AAACCTCC________CTCCGG__CC__
9._CCN_51___
AAACCTCC________CTCCGG__CC__
10._CCN_51___
AAACCTCC________CTCCGG__CC__
11._CCN_51___
AAACCTCC________CTCCGG__CC__
12._CCN_51___
AAACCTCC________CTCCGG__CC__
13._CCN_51___
AAACCTCC________CTCCGG__CC__
14._CCN_51___
AAACCTCC________CTCCGG__CC__
15._CCN_51___
AAACCT__________CTCCGG__CC__
16._CCN_51___
AAACCTCC________CTCCGG__CC__
17._CCN_51___
AAACCTCC________CTCCGG__CC__
18._CCN_51___
______CC____TT______________
19._CCN_51___
______CC____TT______________
20._CCN_51___
______CC____TT______________
21._CCN_51___
______CC____TT______________
22._CCN_51___
AAAC__CCGGAG__GGAG__GGAAGGAG
23._CCN_51___
AAAC__CCGGAG__GGAG__GGAAGGAG
24._CCN_51___
AAAC__CCGGAG__GGAG__GGAAGGAG
25._CCN_51___
AAAACCCC________TTTTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAAGCGCGGGCTAATTAGTTAACC
1._CCN_51___
AAACAAAGCGCGGGCTAATTAGTTAACC
2._CCN_51___
AAACAAAGCGCGGGCTAATTAGTTAACC
3._CCN_51___
AAACAAAGCGCGGGCTAATTAGTTAACC
4._CCN_51___
AAACAAAGCGCGGGCTAATTAGTTAACC
5._CCN_51___
AAACAAAGCGCGGGCTAATTAGTTAACC
6._CCN_51___
AAACAAAGCGCG__CTAATTAGTTAACC
7._CCN_51___
AAACAA__CGCGGGCTAA__AGTTAACC
8._CCN_51___
______AG____GG________TTAA__
9._CCN_51___
______AG____GG________TTAA__
10._CCN_51___
______AG____GG________TTAA__
11._CCN_51___
______AG____GG________TTAA__
12._CCN_51___
______AG____GG________TTAA__
13._CCN_51___
______AG____GG________TTAA__
14._CCN_51___
______AG______________TTAA__
15._CCN_51___
____________GG________TTAA__
16._CCN_51___
______AG____GG________TTAA__
17._CCN_51___
______AG____GG________TTAA__
18._CCN_51___
______AGTT__________________
19._CCN_51___
______AGTT__________________
20._CCN_51___
______AGTT__________________
21._CCN_51___
______AGTT__________________
22._CCN_51___
TTACAGAGCG__GGAGAGAAAGTTAAGG
23._CCN_51___
TTACAGAGCG__GGAGAGAAAGTTAAGG
24._CCN_51___
TTACAGAGCG__GGAGAGAAAGTTAAGG
25._CCN_51___
______AA____GG________AATT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCAATTGGAGCCACAATTGGGTAGCCAG
1._CCN_51___
CCAATTGGAGCCACAATTGGGTAGCCAG
2._CCN_51___
CCAATTGGAGCCACAATTGGGTAGCCAG
3._CCN_51___
CCAATTGGAGCCACAATTGGGTAGCCAG
4._CCN_51___
CCAATTGGAGCCACAATTGGGTAGCCAG
5._CCN_51___
CCAATTGGAGCCACAATTGGGTAGCCAG
6._CCN_51___
CCAATTGGAGCCACAATTGGGTAGCCAG
7._CCN_51___
__AATT__AGCCACAATTGGGTAGCCAG
8._CCN_51___
CCAA______CC__AATT____AG____
9._CCN_51___
CCAA______CC__AATT____AG____
10._CCN_51___
CCAA______CC__AATT____AG____
11._CCN_51___
CCAA______CC__AATT____AG____
12._CCN_51___
CCAA______CC__AATT____AG____
13._CCN_51___
CCAA______CC__AATT____AG____
14._CCN_51___
CCAA______CC__AATT____AG____
15._CCN_51___
__AA______CC__AATT____AG____
16._CCN_51___
CCAA______CC__AATT____AG____
17._CCN_51___
CCAA______CC__AATT____AG____
18._CCN_51___
CC________CC__AA________CC__
19._CCN_51___
CC________CC__AA________CC__
20._CCN_51___
CC________CC__AA________CC__
21._CCN_51___
CC________CC__AA________CC__
22._CCN_51___
GGAAAACCAGCCACAAAACCACAGGGAG
23._CCN_51___
GGAAAACCAGCCACAAAACCACAGGGAG
24._CCN_51___
GGAAAACCAGCCACAAAACCACAGGGAG
25._CCN_51___
CCAA______CC__AAGG____GG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCTGGAGAGCTCCGGAGGTTTCC
1._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
2._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
3._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
4._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
5._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
6._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
7._CCN_51___
CCGTATCTGGAGAGCTCCGGAGGTTTCC
8._CCN_51___
______CT__________________CC
9._CCN_51___
______CT__________________CC
10._CCN_51___
______CT__________________CC
11._CCN_51___
______CT__________________CC
12._CCN_51___
______CT__________________CC
13._CCN_51___
______CT__________________CC
14._CCN_51___
______CT__________________CC
15._CCN_51___
______CT__________________CC
16._CCN_51___
______CT__________________CC
17._CCN_51___
______CT__________________CC
18._CCN_51___
__________AG________________
19._CCN_51___
__________AG________________
20._CCN_51___
__________AG________________
21._CCN_51___
__________AG________________
22._CCN_51___
GGAC__AG__AGAAAG__GGAGACAAGG
23._CCN_51___
GGAC__AG__AGAAAG__GGAGACAAGG
24._CCN_51___
GGAC__AG__AGAAAG__GGAGACAAGG
25._CCN_51___
______CC__________________TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTAGCGCTTTAAGGAGACAATTGGGG
1._CCN_51___
CTGTAGCGCTTTAAGGAGACAATTGGGG
2._CCN_51___
CTGTAGCGCTTTAAGGAGACAATTGGGG
3._CCN_51___
CTGTAGCGCTTTAAGGAGACAATTGGGG
4._CCN_51___
CTGTAG__CTTTAAGGAGACAATTGGGG
5._CCN_51___
CTGTAGCGCTTTAAGGAGACAATTGGGG
6._CCN_51___
CTGTAGCGCTTTAAGGAGACAATTGGGG
7._CCN_51___
CTGTAGCGCTTTAAGGAGACAATTGGGG
8._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
9._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
10._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
11._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
12._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
13._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
14._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
15._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
16._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
17._CCN_51___
CT____CG__TTAAGG__ACAATTGG__
18._CCN_51___
____AG____________ACAA__GGGG
19._CCN_51___
____AG____________ACAA__GGGG
20._CCN_51___
____AG____________ACAA__GGGG
21._CCN_51___
____AG____________ACAA__GGGG
22._CCN_51___
AGACAGCGAGAAAAGGAGACAAAACCGG
23._CCN_51___
AGACAGCGAGAAAAGGAGACAAAACCGG
24._CCN_51___
AGACAGCGAGAAAAGGAGACAAAACCGG
25._CCN_51___
CC____GG__TTCCGG__AAGGGGTT__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCGAGCTACAGCCAAAGACGGCTAACC
1._CCN_51___
TTCGAGCTACAGCCAAAGACGGCTAACC
2._CCN_51___
TTCGAGCTACAGCCAAAGACGGCTAACC
3._CCN_51___
TTCGAGCTACAGCCAAAGACGGCTAACC
4._CCN_51___
TTCGAGCTACAGCCAAAGACGGCTAACC
5._CCN_51___
__CGAGCTACAGCCAA__ACGGCT__CC
6._CCN_51___
TTCGAGCTACAGCCAA__ACGGCT__CC
7._CCN_51___
TTCGAGCTACAGCCAAAGACGGCTAACC
8._CCN_51___
____AGCT__________ACGG______
9._CCN_51___
____AGCT__________ACGG______
10._CCN_51___
____AGCT__________ACGG______
11._CCN_51___
____AGCT__________ACGG______
12._CCN_51___
____AGCT__________ACGG______
13._CCN_51___
____AGCT__________ACGG______
14._CCN_51___
____AGCT__________ACGG______
15._CCN_51___
____AGCT__________ACGG______
16._CCN_51___
____AGCT__________ACGG______
17._CCN_51___
____AGCT__________ACGG______
18._CCN_51___
____AG______________GG____CC
19._CCN_51___
____AG____________AAGG____CC
20._CCN_51___
____AG____________AAGG____CC
21._CCN_51___
____AG____________AAGG____CC
22._CCN_51___
______AGACAGCCAA__ACCCAGAACC
23._CCN_51___
______AGACAGCCAA__ACCCAGAACC
24._CCN_51___
______AGACAGCCAA__ACCCAGAACC
25._CCN_51___
____GGTT__________CCCC______
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTTTCTAGCCCTTTTTATGGX_XX_XX_XX_X
1._CCN_51___
CTTTCTAGCCCTTTTTATGGX_XX_XX_XX_X
2._CCN_51___
CTTTCTAGCCCTTTTTATGGX_XX_XX_XX_X
3._CCN_51___
CTTTCTAGCCCTTTTTATGGX_XX_XX_XX_X
4._CCN_51___
CTTTCTAGCCCTTTTT____X_XX_XX_XX_X
5._CCN_51___
CTTTCTAGCCCTTTTT____X_XX_XX_XX_X
6._CCN_51___
CTTTCTAGCCCTTTTT____X_XX_XX_XX_X
7._CCN_51___
CTTTCTAGCCCTTTTT____X_XX_XX_XX_X
8._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
9._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
10._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
11._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
12._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
13._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
14._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
15._CCN_51___
CTTTCTAG__CTTTTT____X_XX_XX_XX_X
16._CCN_51___
CTCTCTAG__CTTTTT____X_XX_XX_XX_X
17._CCN_51___
CTCTCTAG__CTTTTT____X_XX_XX_XX_X
18._CCN_51___
____CT__CC__TT______X_XX_XX_XX_X
19._CCN_51___
____CT__CC__TT______X_XX_XX_XX_X
20._CCN_51___
____CT__CC__TT______X_XX_XX_XX_X
21._CCN_51___
____CT__CC__TT______X_XX_XX_XX_X
22._CCN_51___
AGAA______AGAAAAATGGX_XX_XX_XX_X
23._CCN_51___
AGAA______AGAAAAATGGX_XX_XX_XX_X
24._CCN_51___
AGAA______AGAAAAATGGX_XX_XX_XX_X
25._CCN_51___
CCCCCCGG__TTGGTT____X_XX_XX_XX_X

Input profile: CCN_51 GC-07-019-1-21

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
 Mars, 2018

1._CCN_51 GC-07-019-1-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
 Mars, 2018

2._CCN_51 GC-07-019-1-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
 Mars, 2018

3._CCN_51 GC-07-019-1-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
 Mars, 2018

4._CCN_51 GC-06-4-1-04

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

5._CCN_51 GC-07-019-1-21

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

6._CCN_51 GC-07-019-1-21

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

7._CCN_51 GC-07-019-1-21

identical
85 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

8._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

9._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

10._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

11._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

12._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016

13._CCN_51

identical
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

14._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

15._CCN_51

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

16._CCN_51

98.8 %
40 shared markers

 Dapeng Zhang, 2016

17._CCN_51

98.8 %
40 shared markers

 Dapeng Zhang, 2016

18._CCN_51 RUQ_1737B

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._CCN_51 RUQ_1736

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._CCN_51 RUQ_1737

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._CCN_51 RUQ_1737C

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._CCN_51 GC-07-19-1-21

51.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
 Mars, 2018

23._CCN_51 RUQ_1736

51.9 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Mars, 2018

24._CCN_51 MITC-000000

51.9 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._CCN_51

50 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240