SNP Profiles of ICS 40   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
6._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
7._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
8._ICS_6___
AAAACTAC________CTCTGG__CC__
9._ICS_6___
AAAACTAC________CTCTGG__CC__
10._ICS_6___
AAAACTAC________CTCTGG__CC__
11._ICS_6___
AAAACTAC________CTCTGG__CC__
12._ICS_6___
AAAACTAC________CTCTGG__CC__
13._ICS_6___
AAAACTAC________CTCTGG__CC__
14._ICS_6___
AAAACTAC________CTCTGG__CC__
15._ICS_6___
AAAACTAC________CTCTGG__CC__
16._ICS_6___
AAAACTAC________CCCCGG__CC__
17._ICS_6___
TTAACTAC________CCCCGG__CC__
18._ICS_6___
____CTAA____TT__CC____CTCC__
19._ICS_6___
______AC____TT______________
20._ICS_6___
AAAA__ACAGAG__GGAG__GGAGGGAG
21._ICS_6___
AAAA__ACGGGG__GGGG__GGAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
8._ICS_6___
______AA____GG________ATAT__
9._ICS_6___
______AA____GG________ATAT__
10._ICS_6___
______AA____GG________ATAT__
11._ICS_6___
______AA____GG________ATAT__
12._ICS_6___
______AA____GG________ATAT__
13._ICS_6___
______AA____GG________ATAT__
14._ICS_6___
______AA____GG________ATAT__
15._ICS_6___
______AA____GG________ATAT__
16._ICS_6___
______AA____GG________ATAT__
17._ICS_6___
______AA____GG________ATAT__
18._ICS_6___
__________CC________GG__ATCG
19._ICS_6___
______AATT__________________
20._ICS_6___
ATCCAGAACC__GGAGAGAAAGATATCG
21._ICS_6___
TTCCAAAACC__GGAGAGAAGGATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAAGTGGGTAGCCAA
1._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
2._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
3._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
4._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
5._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
6._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
7._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
8._ICS_6___
CGAA______CC__AAGT____AG____
9._ICS_6___
CGAA______CC__AAGT____AG____
10._ICS_6___
CGAA______CC__AAGT____AG____
11._ICS_6___
CGAA______CC__AAGT____AG____
12._ICS_6___
CGAA______CC__AAGT____AG____
13._ICS_6___
CGAA______CC__AAGT____AG____
14._ICS_6___
CGAA______CC__AAGT____AG____
15._ICS_6___
CGAA______CC__AAGT____AG____
16._ICS_6___
CCAA______CC__AAGT____AG____
17._ICS_6___
CCAA______CC__AAGT____AA____
18._ICS_6___
CC______AGCCACAAGT____AACC__
19._ICS_6___
CC________CC__AA________CC__
20._ICS_6___
CGAAAGACAGCCACAAACCCACAGGGAA
21._ICS_6___
GGAAAGACAGCCACAAACCCACAAGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGAGAGCTCCGGGGGTTTCT
1._ICS_6___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
2._ICS_6___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
3._ICS_6___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
4._ICS_6___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
5._ICS_6___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
6._ICS_6___
CCGTAT__AGAGAGCTCCGGGGGTTTCT
7._ICS_6___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
8._ICS_6___
______CC__________________CT
9._ICS_6___
______CC__________________CT
10._ICS_6___
______CC__________________CT
11._ICS_6___
______CC__________________CT
12._ICS_6___
______CC__________________CT
13._ICS_6___
______CC__________________CT
14._ICS_6___
__________________________CT
15._ICS_6___
______CC__________________CT
16._ICS_6___
______CC__________________CC
17._ICS_6___
______CC__________________CC
18._ICS_6___
__TTAA____GG____________TTCC
19._ICS_6___
__________GG________________
20._ICS_6___
GGAC__GG__AGAGAG__GGGGACAGAG
21._ICS_6___
GGAA__GG__GGAGAA__GGGGACAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTGGCGCTCTACGGAGACAGGTGTAG
1._ICS_6___
CTGTGGCGCTCTACGGAGACAGGTGTAG
2._ICS_6___
CTGTGGCGCTCTACGGAGACAGGTGTAG
3._ICS_6___
CTGTGGCGCTCTACGGAGACAGGTGTAG
4._ICS_6___
CTGTGGCGCTCTACGGAGACAGGTGTAG
5._ICS_6___
CTGTGGCGCTCTACGGAGACAGGTGTAG
6._ICS_6___
CTGTGGCGCTCTACGGAGACAGGTGTAG
7._ICS_6___
CTGTGGCGCTCTACGGAGAC__GTGTAG
8._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
9._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
10._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
11._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
12._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
13._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
14._ICS_6___
CT____CG__CTACGG__ACAGGTGT__
15._ICS_6___
CT____CG__CTACGG__AC__GTGT__
16._ICS_6___
______CC__TTAAGG__CCGGTTGG__
17._ICS_6___
TT________TTAAGG__CCGGTTGG__
18._ICS_6___
__TT__CCTTTTAA__AGCCGGTTGGGG
19._ICS_6___
____AG____________CCGG__GGGG
20._ICS_6___
AGACGGCGAGAGACGGAGACAGACACAG
21._ICS_6___
AAAAAGGGAAAAAAGGAGCCGGAACCGG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTCCAGACAAAGCCCGCTATCC
1._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
2._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
3._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
4._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
5._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
6._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
7._ICS_6___
CTCCGGTTCCAGACAAAGCCCGCTATCC
8._ICS_6___
____GGTT__________CCCG______
9._ICS_6___
____GGTT__________CCCG______
10._ICS_6___
____GGTT__________CCCG______
11._ICS_6___
____GGTT__________CCCG______
12._ICS_6___
____GGTT__________CCCG______
13._ICS_6___
____GGTT__________CCCG______
14._ICS_6___
____GGTT__________CCCG______
15._ICS_6___
____GGTT__________CCCG______
16._ICS_6___
____AGTT__________CCCG______
17._ICS_6___
____AGTT__________CCGG______
18._ICS_6___
__________________CCCG____CC
19._ICS_6___
____AG____________CCCG____CC
20._ICS_6___
______AACCAGACAA__CCCCAGATCC
21._ICS_6___
______AAACAGCCAA__CCCCAAATCC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
1._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
2._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
3._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
4._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
5._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
6._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
7._ICS_6___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
8._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
9._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
10._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
11._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
12._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
13._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
14._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
15._ICS_6___
CTCTCT__AG__CTGTTT____X_XX_XX_X
16._ICS_6___
CTCTCT__AA__CCTTCT____X_XX_XX_X
17._ICS_6___
CTCT____AA__CCTTTT____X_XX_XX_X
18._ICS_6___
CT______AA__CCTT______X_XX_XX_X
19._ICS_6___
____TT____CT__TT______X_XX_XX_X
20._ICS_6___
AGAG__AA____AGAAAAATGGX_XX_XX_X
21._ICS_6___
AGAG__AA____GGAAAAATGGX_XX_XX_X

Input profile: ICS_6 GC-08-049-1-60

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._ICS_6 GC-08-049-1-60

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._ICS_6 GC-08-049-1-60

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._ICS_6 GC-08-049-1-60

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._ICS_6 GC-08-049-1-60

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._ICS_6 GC-08-049-1-60

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 1
 Dapeng Zhang, 2016

9._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 5
 Dapeng Zhang, 2016

10._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 8
 Dapeng Zhang, 2016

11._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 9
 Dapeng Zhang, 2016

12._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 11
 Dapeng Zhang, 2016

13._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 2 > FP
 Dapeng Zhang, 2016

14._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 4
 Dapeng Zhang, 2016

15._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 6
 Dapeng Zhang, 2016

16._ICS_6 RUQ_721

79.5 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_6

75 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E281 T2
 Dapeng Zhang, 2016

18._ICS_6 RUQ_721

70.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_6 RUQ_721

69 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._ICS_6 GC-08-49-1-60

55.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._ICS_6 RUQ_721

46.9 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240