SNP Profiles of ICS 40   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
6._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
7._ICS_6___
AAAACTACAGAGCTCCCTCTGGCTCCCT
8._ICS_6___
AAAACTAC________CTCTGG__CC__
9._ICS_6___
AAAACTAC________CTCTGG__CC__
10._ICS_6___
AAAACTAC________CTCTGG__CC__
11._ICS_6___
AAAACTAC________CTCTGG__CC__
12._ICS_6___
AAAACTAC________CTCTGG__CC__
13._ICS_6___
AAAACTAC________CTCTGG__CC__
14._ICS_6___
AAAACTAC________CTCTGG__CC__
15._ICS_6___
AAAACTAC________CTCTGG__CC__
16._ICS_6___
AAAACTAC________CCCCGG__CC__
17._ICS_6___
TTAACTAC________CCCCGG__CC__
18._ICS_6___
____CTAA____TT__CC____CTCC__
19._ICS_6___
______AC____TT______________
20._ICS_6___
AAAA__ACAGAG__GGAG__GGAGGGAG
21._ICS_6___
AAAA__ACGGGG__GGGG__GGAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._ICS_6___
ATCCAAAAGGCGGGCTAGTTAGATATCG
8._ICS_6___
______AA____GG________ATAT__
9._ICS_6___
______AA____GG________ATAT__
10._ICS_6___
______AA____GG________ATAT__
11._ICS_6___
______AA____GG________ATAT__
12._ICS_6___
______AA____GG________ATAT__
13._ICS_6___
______AA____GG________ATAT__
14._ICS_6___
______AA____GG________ATAT__
15._ICS_6___
______AA____GG________ATAT__
16._ICS_6___
______AA____GG________ATAT__
17._ICS_6___
______AA____GG________ATAT__
18._ICS_6___
__________CC________GG__ATCG
19._ICS_6___
______AATT__________________
20._ICS_6___
ATCCAGAACC__GGAGAGAAAGATATCG
21._ICS_6___
TTCCAAAACC__GGAGAGAAGGATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAAGTGGGTAGCCAA
1._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
2._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
3._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
4._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
5._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
6._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
7._ICS_6___
CGAACTGTAGCCACAAGTGGGTAGCCAA
8._ICS_6___
CGAA______CC__AAGT____AG____
9._ICS_6___
CGAA______CC__AAGT____AG____
10._ICS_6___
CGAA______CC__AAGT____AG____
11._ICS_6___
CGAA______CC__AAGT____AG____
12._ICS_6___
CGAA______CC__AAGT____AG____
13._ICS_6___
CGAA______CC__AAGT____AG____
14._ICS_6___
CGAA______CC__AAGT____AG____
15._ICS_6___
CGAA______CC__AAGT____AG____
16._ICS_6___
CCAA______CC__AAGT____AG____
17._ICS_6___
CCAA______CC__AAGT____AA____
18._ICS_6___
CC______AGCCACAAGT____AACC__
19._ICS_6___
CC________CC__AA________CC__
20._ICS_6___
CGAAAGACAGCCACAAACCCACAGGGAA
21._ICS_6___
GGAAAGACAGCCACAAACCCACAAGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATAGAGAGCTCCGGGGGTTTCTCT
1._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
2._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
3._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
4._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
5._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
6._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
7._ICS_6___
CCGTATAGAGAGCTCCGGGGGTTTCTCT
8._ICS_6___
________________________CTCT
9._ICS_6___
________________________CTCT
10._ICS_6___
________________________CTCT
11._ICS_6___
________________________CTCT
12._ICS_6___
________________________CTCT
13._ICS_6___
________________________CTCT
14._ICS_6___
________________________CTCT
15._ICS_6___
________________________CTCT
16._ICS_6___
________________________CC__
17._ICS_6___
________________________CCTT
18._ICS_6___
__TTAA__GG____________TTCC__
19._ICS_6___
________GG__________________
20._ICS_6___
GGAC____AGAGAG__GGGGACAGAGAG
21._ICS_6___
GGAA____GGAGAA__GGGGACAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTGGCGCTCTACGGAGACAGGTGTAGCT
1._ICS_6___
GTGGCGCTCTACGGAGACAGGTGTAGCT
2._ICS_6___
GTGGCGCTCTACGGAGACAGGTGTAGCT
3._ICS_6___
GTGGCGCTCTACGGAGACAGGTGTAGCT
4._ICS_6___
GTGGCGCTCTACGGAGACAGGTGTAGCT
5._ICS_6___
GTGGCGCTCTACGGAGACAGGTGTAGCT
6._ICS_6___
GTGGCGCTCTACGGAGACAGGTGTAGCT
7._ICS_6___
GTGGCGCTCTACGGAGAC__GTGTAGCT
8._ICS_6___
____CG__CTACGG__ACAGGTGT____
9._ICS_6___
____CG__CTACGG__ACAGGTGT____
10._ICS_6___
____CG__CTACGG__ACAGGTGT____
11._ICS_6___
____CG__CTACGG__ACAGGTGT____
12._ICS_6___
____CG__CTACGG__ACAGGTGT____
13._ICS_6___
____CG__CTACGG__ACAGGTGT____
14._ICS_6___
____CG__CTACGG__ACAGGTGT____
15._ICS_6___
____CG__CTACGG__AC__GTGT____
16._ICS_6___
____CC__TTAAGG__CCGGTTGG____
17._ICS_6___
________TTAAGG__CCGGTTGG____
18._ICS_6___
TT__CCTTTTAA__AGCCGGTTGGGG__
19._ICS_6___
__AG____________CCGG__GGGG__
20._ICS_6___
ACGGCGAGAGACGGAGACAGACACAG__
21._ICS_6___
AAAGGGAAAAAAGGAGCCGGAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTCCAGACAAAGCCCGCTATCCCT
1._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
2._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
3._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
4._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
5._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
6._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
7._ICS_6___
CCGGTTCCAGACAAAGCCCGCTATCCCT
8._ICS_6___
__GGTT__________CCCG______CT
9._ICS_6___
__GGTT__________CCCG______CT
10._ICS_6___
__GGTT__________CCCG______CT
11._ICS_6___
__GGTT__________CCCG______CT
12._ICS_6___
__GGTT__________CCCG______CT
13._ICS_6___
__GGTT__________CCCG______CT
14._ICS_6___
__GGTT__________CCCG______CT
15._ICS_6___
__GGTT__________CCCG______CT
16._ICS_6___
__AGTT__________CCCG______CT
17._ICS_6___
__AGTT__________CCGG______CT
18._ICS_6___
________________CCCG____CCCT
19._ICS_6___
__AG____________CCCG____CC__
20._ICS_6___
____AACCAGACAA__CCCCAGATCCAG
21._ICS_6___
____AAACAGCCAA__CCCCAAATCCAG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
1._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
2._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
3._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
4._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
5._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
6._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
7._ICS_6___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
8._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
9._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
10._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
11._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
12._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
13._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
14._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
15._ICS_6___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
16._ICS_6___
CTCT__AA__CCTTCT____X_XX_XX_XX_X
17._ICS_6___
CT____AA__CCTTTT____X_XX_XX_XX_X
18._ICS_6___
______AA__CCTT______X_XX_XX_XX_X
19._ICS_6___
__TT____CT__TT______X_XX_XX_XX_X
20._ICS_6___
AG__AA____AGAAAAATGGX_XX_XX_XX_X
21._ICS_6___
AG__AA____GGAAAAATGGX_XX_XX_XX_X

Input profile: ICS_6 GC-08-049-1-60

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._ICS_6 GC-08-049-1-60

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._ICS_6 GC-08-049-1-60

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 4
 Dapeng Zhang, 2016

9._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 1
 Dapeng Zhang, 2016

10._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 5
 Dapeng Zhang, 2016

11._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 8
 Dapeng Zhang, 2016

12._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 9
 Dapeng Zhang, 2016

13._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 11
 Dapeng Zhang, 2016

14._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 2 > FP
 Dapeng Zhang, 2016

15._ICS_6

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 6
 Dapeng Zhang, 2016

16._ICS_6 RUQ_721

78.9 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_6

74.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E281 T2
 Dapeng Zhang, 2016

18._ICS_6 RUQ_721

70.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_6 RUQ_721

69 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._ICS_6 GC-08-49-1-60

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._ICS_6 RUQ_721

47.5 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240