SNP Profiles of UF 613   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAACTACAGAGCTCTCTCTAGTTCTCC
1._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
2._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
3._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
4._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
5._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
6._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
7._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
8._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
9._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
10._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
11._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
12._UF_613___
ATAACTACAGAGCTCTCTCTAGTTCTCC
13._UF_613___
ATAACTAC________CTCTAG__CT__
14._UF_613___
ATAACTAC________CTCTAG__CT__
15._UF_613___
ATAACTAC________CTCTAG__CT__
16._UF_613___
ATAACTAC________CTCTAG__CT__
17._UF_613___
ATAACTAC________CTCTAG__CT__
18._UF_613___
ATAACTAC________CTCTAG__CT__
19._UF_613___
ATAACTAC________CTCTAG__CT__
20._UF_613___
ATAACTAC________CTCTAG__CT__
21._UF_613___
ATAACTAC________CTCTAG__CT__
22._UF_613___
ATAACTAC________CTCTAG__CT__
23._UF_613___
ATAACTAC________CTCTAG__CT__
24._UF_613___
ATAACTAC________CTCTAG__CT__
25._UF_613___
ATACCTAC________CTCTAG__CT__
26._UF_613___
ATACCTAC________CTCTAG__CT__
27._UF_613___
____CTAC____TT__CT____TTCT__
28._UF_613___
ATACCTAC________CTCTAG__CT__
29._UF_613___
______AC____TT______________
30._UF_613___
______AC________CT______CT__
31._UF_613___
AAACCTAC________TTTTGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCGGGCTAATTAGATATCG
1._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
2._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
3._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
4._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
5._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
6._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
7._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
8._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
9._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
10._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
11._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
12._UF_613___
ATACAAAGCGCGGGCTAATTAGATATCG
13._UF_613___
______AG____GG________ATAT__
14._UF_613___
______AG____GG________ATAT__
15._UF_613___
______AG____GG________ATAT__
16._UF_613___
______AG____GG________ATAT__
17._UF_613___
______AG____GG________ATAT__
18._UF_613___
______AG____GG________ATAT__
19._UF_613___
______AG____GG________ATAT__
20._UF_613___
______AG____GG________ATAT__
21._UF_613___
______AG____GG________ATAT__
22._UF_613___
______AG____GG________ATAT__
23._UF_613___
______AG____GG________ATAT__
24._UF_613___
______AG____GG________ATAT__
25._UF_613___
______AG____GG________ATAT__
26._UF_613___
______AG____GG________ATAT__
27._UF_613___
__________CG________AG__ATCG
28._UF_613___
______AG____GG________ATAT__
29._UF_613___
______AGCT__________________
30._UF_613___
____AG____CG__CT____AG__ATCG
31._UF_613___
______AG____CG________ATAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATCTGGAGCCCCAGTTGGTTAGCTAA
1._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
2._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
3._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
4._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
5._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
6._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
7._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
8._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
9._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
10._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
11._UF_613___
GGATCTGGAGCC__AGTTGGTTAGCTAA
12._UF_613___
GGATCTGGAGCCCCAGTTGGTTAGCTAA
13._UF_613___
GGAT______CC__AGTT____AG____
14._UF_613___
GGAT______CC__AGTT____AG____
15._UF_613___
GGAT______CC__AGTT____AG____
16._UF_613___
GGAT______CC__AGTT____AG____
17._UF_613___
GGAT______CC__AGTT____AG____
18._UF_613___
GGAT______CC__AGTT____AG____
19._UF_613___
GGAT______CC__AGTT____AG____
20._UF_613___
GGAT______CC__AGTT____AG____
21._UF_613___
GGAT______CC__AGTT____AG____
22._UF_613___
GGAT______CC__AGTT____AG____
23._UF_613___
GGAT______CC__AGTT____AG____
24._UF_613___
GGAT______CC__AGTT____AG____
25._UF_613___
GGAT______CC__AGTT____AG____
26._UF_613___
GGAT______CC__AGTT____AG____
27._UF_613___
GG______AGCCCCAGTT____AGCT__
28._UF_613___
GGAT______CC__AGTT____AG____
29._UF_613___
GG________CC__AG________CT__
30._UF_613___
CC______AGCC________TT__CT__
31._UF_613___
CGAT______CG__AGGT____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGAGGTTTCTCT
1._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
2._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
3._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
4._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
5._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
6._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
7._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
8._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
9._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
10._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
11._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
12._UF_613___
GGTTCCAAGGAACCCCGGAGGTTTCTCT
13._UF_613___
____CC__________________CTCT
14._UF_613___
____CC__________________CTCT
15._UF_613___
____CC__________________CTCT
16._UF_613___
____CC__________________CTCT
17._UF_613___
____CC__________________CTCT
18._UF_613___
____CC__________________CTCT
19._UF_613___
____CC__________________CTCT
20._UF_613___
____CC__________________CTCT
21._UF_613___
____CC__________________CTCT
22._UF_613___
____CC__________________CTCT
23._UF_613___
____CC__________________CTCT
24._UF_613___
____CC__________________CTCT
25._UF_613___
____CC__________________CTCT
26._UF_613___
____CC__________________CTCT
27._UF_613___
GGTT____GG____________CTCT__
28._UF_613___
____CC__________________CTTT
29._UF_613___
________GG__________________
30._UF_613___
__TT__AA________________CT__
31._UF_613___
____CC__________________TTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCTCTACCGGGCCAGGTTTAGTT
1._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
2._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
3._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
4._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
5._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
6._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
7._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
8._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
9._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
10._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
11._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
12._UF_613___
TTAGCCCTCTACCGGGCCAGGTTTAGTT
13._UF_613___
____CC__CTACCG__CCAGGTTT____
14._UF_613___
____CC__CTACCG__CCAGGTTT____
15._UF_613___
____CC__CTACCG__CCAGGTTT____
16._UF_613___
____CC__CTACCG__CCAGGTTT____
17._UF_613___
____CC__CTACCG__CCAGGTTT____
18._UF_613___
____CC__CTACCG__CCAGGTTT____
19._UF_613___
____CC__CTACCG__CCAGGTTT____
20._UF_613___
____CC__CTACCG__CCAGGTTT____
21._UF_613___
____CC__CTACCG__CCAGGTTT____
22._UF_613___
____CC__CTACCG__CCAGGTTT____
23._UF_613___
____CC__CTACCG__CCAGGTTT____
24._UF_613___
____CC__CTACCG__CCAGGTTT____
25._UF_613___
____CC__CTACCG__CCAGGTTT____
26._UF_613___
____CC__CTACCG__CCAGGTTT____
27._UF_613___
TT__CCCTCTAC__GGCCAGGTTTAG__
28._UF_613___
________CTACCG__CCAGGTTT____
29._UF_613___
__AG____________CCAG__TTAG__
30._UF_613___
____GGCT__AC__GGCCAG________
31._UF_613___
____CC__CCCCCG__AAAGGTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCTTACAGACAAAAACGGCCATACCTTT
1._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
2._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
3._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
4._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
5._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
6._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
7._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
8._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
9._UF_613___
CCTTACAGAC__AAACGGCCATACCTTT
10._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
11._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
12._UF_613___
CCTTACAGACAAAAACGGCCATACCTTT
13._UF_613___
__TT__________ACGG______CTTT
14._UF_613___
__TT__________ACGG______CTTT
15._UF_613___
__TT__________ACGG______CTTT
16._UF_613___
__TT__________ACGG______CTTT
17._UF_613___
__TT__________ACGG______CTTT
18._UF_613___
__TT__________ACGG______CTTT
19._UF_613___
__TT__________ACGG______CTTT
20._UF_613___
__TT__________ACGG______CTTT
21._UF_613___
__TT__________ACGG______CTTT
22._UF_613___
__TT__________ACGG______CTTT
23._UF_613___
__TT__________ACGG______CTTT
24._UF_613___
__TT__________ACGG______CTTT
25._UF_613___
__TT__________ACGG______CTTT
26._UF_613___
__TT__________ACGG______CTTT
27._UF_613___
______________ACGG____ACCT__
28._UF_613___
__TT__________ACGG______CTTT
29._UF_613___
______________ACGG____AC____
30._UF_613___
CC______________CC________TT
31._UF_613___
__CT__________ACCG______TTCT
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
1._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
2._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
3._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
4._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
5._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
6._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
7._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
8._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
9._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
10._UF_613___
CTTTAA__CCGTCTAAGGX_XX_XX_XX_XX_X
11._UF_613___
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
12._UF_613___
CTTTAACCCCGT__AAGGX_XX_XX_XX_XX_X
13._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
14._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
15._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
16._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
17._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
18._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
19._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
20._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
21._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
22._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
23._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
24._UF_613___
CT__AA__CCGT______X_XX_XX_XX_XX_X
25._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
26._UF_613___
CT__AA__CCGTCT____X_XX_XX_XX_XX_X
27._UF_613___
____AACCCCGT______X_XX_XX_XX_XX_X
28._UF_613___
____AA__CCGTCT____X_XX_XX_XX_XX_X
29._UF_613___
CT____CC__GT______X_XX_XX_XX_XX_X
30._UF_613___
__________________X_XX_XX_XX_XX_X
31._UF_613___
CT__AG____GTCT____X_XX_XX_XX_XX_X

Input profile: UF_613 GC-08-046-1-57

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._UF_613 GC-08-046-1-57

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._UF_613 GC-08-046-1-57

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._UF_613 GC-05-057-2-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._UF_613 GC-05-057-2-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._UF_613 GC-05-057-2-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._UF_613 GC-08-046-1-57

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._UF_613 GC-08-046-1-57

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._UF_613 GC-08-046-1-57

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._UF_613 GC-08-046-1-57

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._UF_613 GC-05-057-2-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

11._UF_613 GC-05-057-2-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._UF_613 GC-08-046-1-57

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

14._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

15._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

16._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

17._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

18._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

19._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

20._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

21._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

22._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

23._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016

24._UF_613

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

25._UF_613

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

26._UF_613 RUQ_1573

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._UF_613 RUQ_1573

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._UF_613

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

29._UF_613 RUQ_1573

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

30._UF_613 RUQ_1573

86.5 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240