SNP Profiles of JA 9 /37 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCCCAA
1._GC-08-071-1-93
AATTAAGGGGCCCCCCCCGGTTCCCCAA
2._GC-08-071-1-93
AATTAAGGGGCCCCCCCCGGTTCCCCAA
3._GC-08-071-1-93
AATTAAGGGGCCCCCCCCGGTTCCCCAA
4._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
5._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
6._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
7._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
8._JA_9_/37_[POU]
AATTCC________CCCCGG__CC____
9._GC-08-071-1-93
AATTAAGGAGCTCCCTCTGGTTCTCTAA
10._JA_9_/37_[POU]
AATTAA________CTCTGG__CT____
11._GC-08-71-1-93
AA__AAGGGG__GGGG__GGAAGGGGTT
 1516171819202122232425262728
_Input profile
CCAAGGCCCCTTAATTGGTTAACCGGAA
1._GC-08-071-1-93
CCAAGGCCCCTTAATTGGTTAACCGGAA
2._GC-08-071-1-93
CCAAGGCCCCTTAATTGGTTAACCGGAA
3._GC-08-071-1-93
CCAAGGCCCCTTAATTGGTTAACCGGAA
4._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
5._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
6._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
7._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
8._JA_9_/37_[POU]
__AA____GG________TTAA__GGAA
9._GC-08-071-1-93
ACAGGGCCCCCTAATTGGATAACGCGAT
10._JA_9_/37_[POU]
__AG____CC________ATAA__CGAT
11._GC-08-71-1-93
CCAACC__CCAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGGAACCCCGGTTGGTTAATTAACCGG
1._GC-08-071-1-93
TTGGAACCCCGGTTGGTTAATTAACCGG
2._GC-08-071-1-93
TTGGAACCCCGGTTGGTTAATTAACCGG
3._GC-08-071-1-93
TTGGAACCCCGGTTGGTTAATTAACCGG
4._JA_9_/37_[POU]
______CC__GGTT____AA________
5._JA_9_/37_[POU]
______CC__GGTT____AA________
6._JA_9_/37_[POU]
______CC__GGTT____AA________
7._JA_9_/37_[POU]
______CC__GGTT____AA________
8._JA_9_/37_[POU]
______CC__AGTT____AA________
9._GC-08-071-1-93
TTGTAGCCCCAGGTGTTTGGCTAGCCGT
10._JA_9_/37_[POU]
______CC__AGGT____GG________
11._GC-08-71-1-93
AACCAACCCCGGAACCAAAAAAAAGGCC
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._GC-08-071-1-93
TTCCAAGGAACCCCGGGGTTTTCCTTTT
2._GC-08-071-1-93
TTCCAAGGAACCCCGGGGTTTTCCTTTT
3._GC-08-071-1-93
TTCCAAGG__CCCCGGGGTTTTCCTTTT
4._JA_9_/37_[POU]
__CC__________________CCTT__
5._JA_9_/37_[POU]
__CC__________________CCTT__
6._JA_9_/37_[POU]
__CC__________________CCTT__
7._JA_9_/37_[POU]
__CC__________________CCTT__
8._JA_9_/37_[POU]
__CC__________________CTTT__
9._GC-08-071-1-93
TTCCAAGGAGCCACAGAGGT__CTCTTT
10._JA_9_/37_[POU]
__CC__________________CTCT__
11._GC-08-71-1-93
__GG__GGAAGG__GGGGAAAAGGAAAA
 5758596061626364656667686970
_Input profile
AACCTTCCAAGGGGCCAATTGGGGTTCC
1._GC-08-071-1-93
AACCTTCCAAGGGGCCAATTGGGGTTCC
2._GC-08-071-1-93
AACCTTCCAAGGGGCCAATTGGGGTTCC
3._GC-08-071-1-93
AACCTTCCAAGGGGCCAATTGGGGTTCC
4._JA_9_/37_[POU]
__CC__CCAAGG__CCAATTGG______
5._JA_9_/37_[POU]
__CC__CCAAGG__CCAATTGG______
6._JA_9_/37_[POU]
__CC__CCAAGG__CCAATTGG______
7._JA_9_/37_[POU]
__CC__CCAAGG__CCAATTGG______
8._JA_9_/37_[POU]
__CC__CCACGG__CCAGTTGG______
9._GC-08-071-1-93
AGCCCTCTACCGGGACAGGTGTAGCTCC
10._JA_9_/37_[POU]
__CC__CTACCG__ACAGGTGT______
11._GC-08-71-1-93
AAGGAAGGAAGGGGCCAAAACCGG____
 7172737475767778798081828384
_Input profile
GGTTAAAACCAAAACCGGCCTTAATTTT
1._GC-08-071-1-93
GGTTAAAACCAAAACCGGCCTTAATTTT
2._GC-08-071-1-93
GGTTAAAACCAAAACCGGCCTTAATTTT
3._GC-08-071-1-93
GGTTAAAACCAAAACCGGCCTTAATTTT
4._JA_9_/37_[POU]
GGTT__________CCGG______TTTT
5._JA_9_/37_[POU]
GGTT__________CCGG______TTTT
6._JA_9_/37_[POU]
GGTT__________CCGG______TTTT
7._JA_9_/37_[POU]
GGTT__________CCGG______TTTT
8._JA_9_/37_[POU]
AATT__________CCGG______CTTT
9._GC-08-071-1-93
GGTTACAGACAAAACCGGCCATACTTCT
10._JA_9_/37_[POU]
GGTT__________CCGG______TTCT
11._GC-08-71-1-93
__AAAAAACCAA__CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-071-1-93
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-071-1-93
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-071-1-93
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._JA_9_/37_[POU]
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
5._JA_9_/37_[POU]
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
6._JA_9_/37_[POU]
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
7._JA_9_/37_[POU]
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
8._JA_9_/37_[POU]
TT__AA__CCGTTT____X_XX_XX_XX_XX_X
9._GC-08-071-1-93
CTCCAGCTCTGTCTAAGGX_XX_XX_XX_XX_X
10._JA_9_/37_[POU]
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
11._GC-08-71-1-93
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._JA_9_/37_[POU] GC-08-071-1-93

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

2._JA_9_/37_[POU] GC-08-071-1-93

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

5._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

6._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

7._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._JA_9_/37_[POU]

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

9._JA_9_/37_[POU] GC-08-071-1-93

70.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._JA_9_/37_[POU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240