SNP Profiles of GU 207   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCCCAA
1._JA_9_/37_[POU]___
AATTAAGGGGCCCCCCCCGGTTCCCCAA
2._JA_9_/37_[POU]___
AATTAAGGGGCCCCCCCCGGTTCCCCAA
3._JA_9_/37_[POU]___
AATTAAGGGGCCCCCCCCGGTTCCCCAA
4._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
5._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
6._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
7._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
8._JA_9_/37_[POU]___
AATTCC________CCCCGG__CC____
9._JA_9_/37_[POU]___
AATTAAGGAGCTCCCTCTGGTTCTCTAA
10._JA_9_/37_[POU]___
AATTAA________CTCTGG__CT____
11._JA_9_/37_[POU]___
AA__AAGGGG__GGGG__GGAAGGGGTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCTTAATTGGTTAACCGGAA
1._JA_9_/37_[POU]___
CCAAGGCCCCTTAATTGGTTAACCGGAA
2._JA_9_/37_[POU]___
CCAAGGCCCCTTAATTGGTTAACCGGAA
3._JA_9_/37_[POU]___
CCAAGGCCCCTTAATTGGTTAACCGGAA
4._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
5._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
6._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
7._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
8._JA_9_/37_[POU]___
__AA____GG________TTAA__GGAA
9._JA_9_/37_[POU]___
ACAGGGCCCCCTAATTGGATAACGCGAT
10._JA_9_/37_[POU]___
__AG____CC________ATAA__CGAT
11._JA_9_/37_[POU]___
CCAACC__CCAAGGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAACCCCGGTTGGTTAATTAACCGG
1._JA_9_/37_[POU]___
TTGGAACCCCGGTTGGTTAATTAACCGG
2._JA_9_/37_[POU]___
TTGGAACCCCGGTTGGTTAATTAACCGG
3._JA_9_/37_[POU]___
TTGGAACCCCGGTTGGTTAATTAACCGG
4._JA_9_/37_[POU]___
______CC__GGTT____AA________
5._JA_9_/37_[POU]___
______CC__GGTT____AA________
6._JA_9_/37_[POU]___
______CC__GGTT____AA________
7._JA_9_/37_[POU]___
______CC__GGTT____AA________
8._JA_9_/37_[POU]___
______CC__AGTT____AA________
9._JA_9_/37_[POU]___
TTGTAGCCCCAGGTGTTTGGCTAGCCGT
10._JA_9_/37_[POU]___
______CC__AGGT____GG________
11._JA_9_/37_[POU]___
AACCAACCCCGGAACCAAAAAAAAGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._JA_9_/37_[POU]___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
2._JA_9_/37_[POU]___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
3._JA_9_/37_[POU]___
TTCCAAGG__CCCCGGGGTTTTCCTTTT
4._JA_9_/37_[POU]___
__CC__________________CCTT__
5._JA_9_/37_[POU]___
__CC__________________CCTT__
6._JA_9_/37_[POU]___
__CC__________________CCTT__
7._JA_9_/37_[POU]___
__CC__________________CCTT__
8._JA_9_/37_[POU]___
__CC__________________CTTT__
9._JA_9_/37_[POU]___
TTCCAAGGAGCCACAGAGGT__CTCTTT
10._JA_9_/37_[POU]___
__CC__________________CTCT__
11._JA_9_/37_[POU]___
__GG__GGAAGG__GGGGAAAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AACCTTCCAAGGGGCCAATTGGGGTTCC
1._JA_9_/37_[POU]___
AACCTTCCAAGGGGCCAATTGGGGTTCC
2._JA_9_/37_[POU]___
AACCTTCCAAGGGGCCAATTGGGGTTCC
3._JA_9_/37_[POU]___
AACCTTCCAAGGGGCCAATTGGGGTTCC
4._JA_9_/37_[POU]___
__CC__CCAAGG__CCAATTGG______
5._JA_9_/37_[POU]___
__CC__CCAAGG__CCAATTGG______
6._JA_9_/37_[POU]___
__CC__CCAAGG__CCAATTGG______
7._JA_9_/37_[POU]___
__CC__CCAAGG__CCAATTGG______
8._JA_9_/37_[POU]___
__CC__CCACGG__CCAGTTGG______
9._JA_9_/37_[POU]___
AGCCCTCTACCGGGACAGGTGTAGCTCC
10._JA_9_/37_[POU]___
__CC__CTACCG__ACAGGTGT______
11._JA_9_/37_[POU]___
AAGGAAGGAAGGGGCCAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTAAAACCAAAACCGGCCTTAATTTT
1._JA_9_/37_[POU]___
GGTTAAAACCAAAACCGGCCTTAATTTT
2._JA_9_/37_[POU]___
GGTTAAAACCAAAACCGGCCTTAATTTT
3._JA_9_/37_[POU]___
GGTTAAAACCAAAACCGGCCTTAATTTT
4._JA_9_/37_[POU]___
GGTT__________CCGG______TTTT
5._JA_9_/37_[POU]___
GGTT__________CCGG______TTTT
6._JA_9_/37_[POU]___
GGTT__________CCGG______TTTT
7._JA_9_/37_[POU]___
GGTT__________CCGG______TTTT
8._JA_9_/37_[POU]___
AATT__________CCGG______CTTT
9._JA_9_/37_[POU]___
GGTTACAGACAAAACCGGCCATACTTCT
10._JA_9_/37_[POU]___
GGTT__________CCGG______TTCT
11._JA_9_/37_[POU]___
__AAAAAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._JA_9_/37_[POU]___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._JA_9_/37_[POU]___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._JA_9_/37_[POU]___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._JA_9_/37_[POU]___
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
5._JA_9_/37_[POU]___
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
6._JA_9_/37_[POU]___
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
7._JA_9_/37_[POU]___
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
8._JA_9_/37_[POU]___
TT__AA__CCGTTT____X_XX_XX_XX_XX_X
9._JA_9_/37_[POU]___
CTCCAGCTCTGTCTAAGGX_XX_XX_XX_XX_X
10._JA_9_/37_[POU]___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
11._JA_9_/37_[POU]___
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

1._JA_9_/37_[POU] GC-08-071-1-93

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._JA_9_/37_[POU] GC-08-071-1-93

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

5._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

6._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

7._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016

8._JA_9_/37_[POU]

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

9._JA_9_/37_[POU] GC-08-071-1-93

70.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._JA_9_/37_[POU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 2 > FP
 Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240