SNP Profiles of CATONGO   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCCCAA
1._JA_9_/37_[POU]___
AATTAAGGGGCCCCCCCCGGTTCCCCAA
2._JA_9_/37_[POU]___
AATTAAGGGGCCCCCCCCGGTTCCCCAA
3._JA_9_/37_[POU]___
AATTAAGGGGCCCCCCCCGGTTCCCCAA
4._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
5._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
6._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
7._JA_9_/37_[POU]___
AATTAA________CCCCGG__CC____
8._JA_9_/37_[POU]___
AATTCC________CCCCGG__CC____
9._JA_9_/37_[POU]___
AATTAAGGAGCTCCCTCTGGTTCTCTAA
10._JA_9_/37_[POU]___
AATTAA________CTCTGG__CT____
11._JA_9_/37_[POU]___
AA__AAGGGG__GGGG__GGAAGGGGTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCTTAATTGGTTAACCGGAA
1._JA_9_/37_[POU]___
CCAAGGCCCCTTAATTGGTTAACCGGAA
2._JA_9_/37_[POU]___
CCAAGGCCCCTTAATTGGTTAACCGGAA
3._JA_9_/37_[POU]___
CCAAGGCCCCTTAATTGGTTAACCGGAA
4._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
5._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
6._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
7._JA_9_/37_[POU]___
__AA____CC________TTAA__GGAA
8._JA_9_/37_[POU]___
__AA____GG________TTAA__GGAA
9._JA_9_/37_[POU]___
ACAGGGCCCCCTAATTGGATAACGCGAT
10._JA_9_/37_[POU]___
__AG____CC________ATAA__CGAT
11._JA_9_/37_[POU]___
CCAACC__CCAAGGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAACCCCGGTTGGTTAATTAACCGG
1._JA_9_/37_[POU]___
TTGGAACCCCGGTTGGTTAATTAACCGG
2._JA_9_/37_[POU]___
TTGGAACCCCGGTTGGTTAATTAACCGG
3._JA_9_/37_[POU]___
TTGGAACCCCGGTTGGTTAATTAACCGG
4._JA_9_/37_[POU]___
______CC__GGTT____AA________
5._JA_9_/37_[POU]___
______CC__GGTT____AA________
6._JA_9_/37_[POU]___
______CC__GGTT____AA________
7._JA_9_/37_[POU]___
______CC__GGTT____AA________
8._JA_9_/37_[POU]___
______CC__AGTT____AA________
9._JA_9_/37_[POU]___
TTGTAGCCCCAGGTGTTTGGCTAGCCGT
10._JA_9_/37_[POU]___
______CC__AGGT____GG________
11._JA_9_/37_[POU]___
AACCAACCCCGGAACCAAAAAAAAGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
1._JA_9_/37_[POU]___
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
2._JA_9_/37_[POU]___
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
3._JA_9_/37_[POU]___
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
4._JA_9_/37_[POU]___
__CC________________CCTT____
5._JA_9_/37_[POU]___
__CC________________CCTT____
6._JA_9_/37_[POU]___
__CC________________CCTT____
7._JA_9_/37_[POU]___
__CC________________CCTT____
8._JA_9_/37_[POU]___
__CC________________CTTT____
9._JA_9_/37_[POU]___
TTCCAAGGCCACAGAGGT__CTCTTTAG
10._JA_9_/37_[POU]___
__CC________________CTCT____
11._JA_9_/37_[POU]___
__GG__GGGG__GGGGAAAAGGAAAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTCCAAGGGGCCAATTGGGGTTCCGG
1._JA_9_/37_[POU]___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
2._JA_9_/37_[POU]___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
3._JA_9_/37_[POU]___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
4._JA_9_/37_[POU]___
CC__CCAAGG__CCAATTGG______GG
5._JA_9_/37_[POU]___
CC__CCAAGG__CCAATTGG______GG
6._JA_9_/37_[POU]___
CC__CCAAGG__CCAATTGG______GG
7._JA_9_/37_[POU]___
CC__CCAAGG__CCAATTGG______GG
8._JA_9_/37_[POU]___
CC__CCACGG__CCAGTTGG______AA
9._JA_9_/37_[POU]___
CCCTCTACCGGGACAGGTGTAGCTCCGG
10._JA_9_/37_[POU]___
CC__CTACCG__ACAGGTGT______GG
11._JA_9_/37_[POU]___
GGAAGGAAGGGGCCAAAACCGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTAAAACCAAAACCGGCCTTAATTTTTT
1._JA_9_/37_[POU]___
TTAAAACCAAAACCGGCCTTAATTTTTT
2._JA_9_/37_[POU]___
TTAAAACCAAAACCGGCCTTAATTTTTT
3._JA_9_/37_[POU]___
TTAAAACCAAAACCGGCCTTAATTTTTT
4._JA_9_/37_[POU]___
TT__________CCGG______TTTTTT
5._JA_9_/37_[POU]___
TT__________CCGG______TTTTTT
6._JA_9_/37_[POU]___
TT__________CCGG______TTTTTT
7._JA_9_/37_[POU]___
TT__________CCGG______TTTTTT
8._JA_9_/37_[POU]___
TT__________CCGG______CTTTTT
9._JA_9_/37_[POU]___
TTACAGACAAAACCGGCCATACTTCTCT
10._JA_9_/37_[POU]___
TT__________CCGG______TTCTCT
11._JA_9_/37_[POU]___
AAAAAACCAA__CCCCGGTTAAAAAA__
 85 86 87 88 89 90 91 92       
_Input profile
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._JA_9_/37_[POU]___
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._JA_9_/37_[POU]___
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._JA_9_/37_[POU]___
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._JA_9_/37_[POU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
5._JA_9_/37_[POU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
6._JA_9_/37_[POU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
7._JA_9_/37_[POU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
8._JA_9_/37_[POU]___
__AA__CCGTTT____X_XX_XX_XX_XX_XX_X
9._JA_9_/37_[POU]___
CCAGCTCTGTCTAAGGX_XX_XX_XX_XX_XX_X
10._JA_9_/37_[POU]___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
11._JA_9_/37_[POU]___
AA____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

5._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

6._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

7._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016

8._JA_9_/37_[POU]

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

9._JA_9_/37_[POU] GC-08-071-1-93

70.3 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._JA_9_/37_[POU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 2 > FP
 Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240