SNP Profiles of JA 9 /37 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCCCAA
1._GC-08-071-1-93
AATTAAGGGGCCCCCCCCGGTTCCCCAA
2._GC-08-071-1-93
AATTAAGGGGCCCCCCCCGGTTCCCCAA
3._GC-08-071-1-93
AATTAAGGGGCCCCCCCCGGTTCCCCAA
4._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
5._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
6._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
7._JA_9_/37_[POU]
AATTAA________CCCCGG__CC____
8._JA_9_/37_[POU]
AATTCC________CCCCGG__CC____
9._GC-08-071-1-93
AATTAAGGAGCTCCCTCTGGTTCTCTAA
10._JA_9_/37_[POU]
AATTAA________CTCTGG__CT____
11._GC-08-71-1-93
AA__AAGGGG__GGGG__GGAAGGGGTT
 1516171819202122232425262728
_Input profile
CCAAGGCCCCTTAATTGGTTAACCGGAA
1._GC-08-071-1-93
CCAAGGCCCCTTAATTGGTTAACCGGAA
2._GC-08-071-1-93
CCAAGGCCCCTTAATTGGTTAACCGGAA
3._GC-08-071-1-93
CCAAGGCCCCTTAATTGGTTAACCGGAA
4._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
5._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
6._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
7._JA_9_/37_[POU]
__AA____CC________TTAA__GGAA
8._JA_9_/37_[POU]
__AA____GG________TTAA__GGAA
9._GC-08-071-1-93
ACAGGGCCCCCTAATTGGATAACGCGAT
10._JA_9_/37_[POU]
__AG____CC________ATAA__CGAT
11._GC-08-71-1-93
CCAACC__CCAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGGAACCCCGGTTGGTTAATTAACCGG
1._GC-08-071-1-93
TTGGAACCCCGGTTGGTTAATTAACCGG
2._GC-08-071-1-93
TTGGAACCCCGGTTGGTTAATTAACCGG
3._GC-08-071-1-93
TTGGAACCCCGGTTGGTTAATTAACCGG
4._JA_9_/37_[POU]
______CC__GGTT____AA________
5._JA_9_/37_[POU]
______CC__GGTT____AA________
6._JA_9_/37_[POU]
______CC__GGTT____AA________
7._JA_9_/37_[POU]
______CC__GGTT____AA________
8._JA_9_/37_[POU]
______CC__AGTT____AA________
9._GC-08-071-1-93
TTGTAGCCCCAGGTGTTTGGCTAGCCGT
10._JA_9_/37_[POU]
______CC__AGGT____GG________
11._GC-08-71-1-93
AACCAACCCCGGAACCAAAAAAAAGGCC
 4344454647484950515253545556
_Input profile
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
1._GC-08-071-1-93
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
2._GC-08-071-1-93
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
3._GC-08-071-1-93
TTCCAAGGCCCCGGGGTTTTCCTTTTAA
4._JA_9_/37_[POU]
__CC________________CCTT____
5._JA_9_/37_[POU]
__CC________________CCTT____
6._JA_9_/37_[POU]
__CC________________CCTT____
7._JA_9_/37_[POU]
__CC________________CCTT____
8._JA_9_/37_[POU]
__CC________________CTTT____
9._GC-08-071-1-93
TTCCAAGGCCACAGAGGT__CTCTTTAG
10._JA_9_/37_[POU]
__CC________________CTCT____
11._GC-08-71-1-93
__GG__GGGG__GGGGAAAAGGAAAAAA
 5758596061626364656667686970
_Input profile
CCTTCCAAGGGGCCAATTGGGGTTCCGG
1._GC-08-071-1-93
CCTTCCAAGGGGCCAATTGGGGTTCCGG
2._GC-08-071-1-93
CCTTCCAAGGGGCCAATTGGGGTTCCGG
3._GC-08-071-1-93
CCTTCCAAGGGGCCAATTGGGGTTCCGG
4._JA_9_/37_[POU]
CC__CCAAGG__CCAATTGG______GG
5._JA_9_/37_[POU]
CC__CCAAGG__CCAATTGG______GG
6._JA_9_/37_[POU]
CC__CCAAGG__CCAATTGG______GG
7._JA_9_/37_[POU]
CC__CCAAGG__CCAATTGG______GG
8._JA_9_/37_[POU]
CC__CCACGG__CCAGTTGG______AA
9._GC-08-071-1-93
CCCTCTACCGGGACAGGTGTAGCTCCGG
10._JA_9_/37_[POU]
CC__CTACCG__ACAGGTGT______GG
11._GC-08-71-1-93
GGAAGGAAGGGGCCAAAACCGG______
 7172737475767778798081828384
_Input profile
TTAAAACCAAAACCGGCCTTAATTTTTT
1._GC-08-071-1-93
TTAAAACCAAAACCGGCCTTAATTTTTT
2._GC-08-071-1-93
TTAAAACCAAAACCGGCCTTAATTTTTT
3._GC-08-071-1-93
TTAAAACCAAAACCGGCCTTAATTTTTT
4._JA_9_/37_[POU]
TT__________CCGG______TTTTTT
5._JA_9_/37_[POU]
TT__________CCGG______TTTTTT
6._JA_9_/37_[POU]
TT__________CCGG______TTTTTT
7._JA_9_/37_[POU]
TT__________CCGG______TTTTTT
8._JA_9_/37_[POU]
TT__________CCGG______CTTTTT
9._GC-08-071-1-93
TTACAGACAAAACCGGCCATACTTCTCT
10._JA_9_/37_[POU]
TT__________CCGG______TTCTCT
11._GC-08-71-1-93
AAAAAACCAA__CCCCGGTTAAAAAA__
 8586878889909192      
_Input profile
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-08-071-1-93
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-08-071-1-93
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-08-071-1-93
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._JA_9_/37_[POU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
5._JA_9_/37_[POU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
6._JA_9_/37_[POU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
7._JA_9_/37_[POU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
8._JA_9_/37_[POU]
__AA__CCGTTT____X_XX_XX_XX_XX_XX_X
9._GC-08-071-1-93
CCAGCTCTGTCTAAGGX_XX_XX_XX_XX_XX_X
10._JA_9_/37_[POU]
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
11._GC-08-71-1-93
AA____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

5._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

6._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

7._JA_9_/37_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._JA_9_/37_[POU]

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

9._JA_9_/37_[POU] GC-08-071-1-93

70.3 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._JA_9_/37_[POU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240