SNP Profiles of UF 676 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
1._GC-08-080-2-03	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
2._GC-08-080-2-03	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
3._GC-08-080-2-03	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
4._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
5._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
6._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
7._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
8._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
9._RUQ_56	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
10._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
11._RUQ_56	__	__	__	AC	__	__	__	__	CT	__	__	__	CC	__
12._UF_676	AA	AA	CT	AC	__	__	__	__	CT	CT	GG	__	CC	__
13._RUQ_56	__	__	CT	AA	__	__	CT	__	CT	__	__	CT	CC	__
14._RUQ_56	__	__	__	AC	__	__	CT	__	__	__	__	__	__	__
15._RUQ_56	AA	AA	__	AC	AG	AG	__	GG	AG	__	GG	AG	GG	AG
16._MITC-000064	AA	AA	__	AC	AG	AG	__	GG	AG	__	GG	AG	GG	AG
17._UF_676_Fld#_180_Plt#_2	AA	AA	__	AC	AG	AG	__	GG	AG	__	GG	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
1._GC-08-080-2-03	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
2._GC-08-080-2-03	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
3._GC-08-080-2-03	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
4._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
5._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
6._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
7._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
8._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
9._RUQ_56	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
10._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
11._RUQ_56	__	__	AG	__	__	CG	__	CT	__	__	AG	__	AT	CG
12._UF_676	__	__	__	AA	__	__	GG	__	__	__	__	AT	AT	__
13._RUQ_56	__	__	__	__	__	CG	__	__	__	__	AG	__	AT	CG
14._RUQ_56	__	__	__	AA	TT	__	__	__	__	__	__	__	__	__
15._RUQ_56	AT	CC	AG	AA	CC	__	GG	AG	AG	AA	AG	AT	AT	CG
16._MITC-000064	AT	CC	AG	AA	CC	__	GG	AG	AG	AA	AG	AT	AT	CG
17._UF_676_Fld#_180_Plt#_2	AT	CC	AG	AA	CC	__	GG	AG	AG	AA	AG	AT	AT	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	CT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA
1._GC-08-080-2-03	CG	AA	CT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA
2._GC-08-080-2-03	CG	AA	CT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA
3._GC-08-080-2-03	CG	AA	CT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA
4._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
5._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
6._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
7._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
8._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
9._RUQ_56	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
10._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
11._RUQ_56	CG	__	__	__	AG	CC	__	__	__	__	GT	__	CC	__
12._UF_676	CG	AA	__	__	__	CC	__	AG	GT	__	__	AG	__	__
13._RUQ_56	CG	__	__	__	AG	CC	AC	AG	GT	__	__	AG	CC	__
14._RUQ_56	CG	__	__	__	__	CC	__	AG	__	__	__	__	CC	__
15._RUQ_56	CG	AA	AG	AC	AG	CC	AC	AG	AC	CC	AC	AG	GG	AA
16._MITC-000064	CG	AA	AG	AC	AG	CC	AC	AG	AC	CC	AC	AG	GG	AA
17._UF_676_Fld#_180_Plt#_2	CG	AA	AG	AC	AG	CC	AC	AG	AC	CC	AC	AG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT
1._GC-08-080-2-03	CC	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT
2._GC-08-080-2-03	CC	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT
3._GC-08-080-2-03	CC	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT
4._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
5._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
6._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
7._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
8._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
9._RUQ_56	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
10._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
11._RUQ_56	__	__	AT	__	AG	__	__	__	__	__	__	__	__	CT
12._UF_676	__	__	__	CC	__	__	__	__	__	__	__	__	__	CT
13._RUQ_56	__	GT	AT	__	__	AG	__	__	__	__	__	__	CT	CT
14._RUQ_56	__	__	__	__	__	AG	__	__	__	__	__	__	__	__
15._RUQ_56	GG	AC	__	GG	__	AG	AG	AG	__	GG	GG	AC	AG	AG
16._MITC-000064	GG	AC	__	GG	__	AG	AG	AG	__	GG	GG	AC	AG	AG
17._UF_676_Fld#_180_Plt#_2	GG	AC	__	GG	__	AG	AG	AG	__	GG	GG	AC	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CT	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG
1._GC-08-080-2-03	CT	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG
2._GC-08-080-2-03	CT	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG
3._GC-08-080-2-03	CT	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG
4._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
5._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
6._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
7._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
8._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
9._RUQ_56	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
10._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
11._RUQ_56	__	__	__	CG	CT	__	AC	__	AG	AC	AG	__	__	__
12._UF_676	CT	__	__	CG	__	CT	AC	GG	__	AC	AG	GT	GT	__
13._RUQ_56	__	GT	__	CG	CT	CT	AC	__	AG	AC	AG	GT	GT	AG
14._RUQ_56	__	__	AG	__	__	__	__	__	__	AC	AG	__	GT	AG
15._RUQ_56	AG	AC	AG	CG	AG	AG	AC	GG	AG	AC	AG	AC	AC	AG
16._MITC-000064	AG	AC	AG	CG	AG	AG	AC	GG	AG	AC	AG	AC	AC	AG
17._UF_676_Fld#_180_Plt#_2	AG	AC	AG	CG	AG	AG	AC	GG	AG	AC	AG	AC	AC	AG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	CC	GG	TT	AC	AG	AC	AA	AG	CC	CG	CT	AT	AC
1._GC-08-080-2-03	CT	CC	GG	TT	AC	AG	AC	AA	AG	CC	CG	CT	AT	AC
2._GC-08-080-2-03	CT	CC	GG	TT	AC	AG	AC	AA	AG	CC	CG	CT	AT	AC
3._GC-08-080-2-03	CT	CC	GG	TT	AC	AG	AC	AA	__	CC	CG	CT	AT	AC
4._UF_676	__	__	GG	TT	__	__	__	__	__	CC	CG	__	__	__
5._UF_676	__	__	GG	TT	__	__	__	__	__	CC	CG	__	__	__
6._UF_676	__	__	GG	TT	__	__	__	__	__	CC	CG	__	__	__
7._UF_676	__	__	GG	TT	__	__	__	__	__	CC	CG	__	__	__
8._UF_676	__	__	AG	TT	__	__	__	__	__	CC	CG	__	__	__
9._RUQ_56	__	__	AG	TT	__	__	__	__	__	CC	CG	__	__	__
10._UF_676	__	__	AG	TT	__	__	__	__	__	CC	CG	__	__	__
11._RUQ_56	__	CC	__	__	__	__	__	__	__	__	CG	__	__	__
12._UF_676	__	__	AG	TT	__	__	__	__	__	CC	GG	__	__	__
13._RUQ_56	__	__	__	__	__	__	__	__	__	CC	CG	__	__	AC
14._RUQ_56	__	__	AG	__	__	__	__	__	__	AC	CG	__	__	AC
15._RUQ_56	__	__	__	AA	AC	AG	AC	AA	__	CC	CG	AG	AT	AC
16._MITC-000064	__	__	__	AA	AC	AG	AC	AA	__	CC	CG	AG	AT	AC
17._UF_676_Fld#_180_Plt#_2	__	__	__	AA	AC	AG	AC	AA	__	CC	CG	AG	AT	AC

	85	86	87	88	89	90	91	92	93	94	95
_Input profile	CT	CT	CT	TT	AG	CT	CT	GT	TT	AT	GG	X_X	X_X	X_X
1._GC-08-080-2-03	CT	CT	CT	TT	AG	CT	CT	GT	TT	AT	GG	X_X	X_X	X_X
2._GC-08-080-2-03	CT	CT	CT	TT	AG	CT	CT	GT	TT	AT	GG	X_X	X_X	X_X
3._GC-08-080-2-03	CT	CT	CT	TT	AG	CT	CT	GT	TT	AT	GG	X_X	X_X	X_X
4._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
5._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
6._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
7._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
8._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
9._RUQ_56	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
10._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
11._RUQ_56	__	CT	__	__	__	__	__	__	__	__	__	X_X	X_X	X_X
12._UF_676	CT	CT	CT	__	AG	__	CT	GT	TT	__	__	X_X	X_X	X_X
13._RUQ_56	CT	__	__	__	AG	CC	CT	GT	__	__	__	X_X	X_X	X_X
14._RUQ_56	__	__	CT	__	__	CT	__	GT	__	__	__	X_X	X_X	X_X
15._RUQ_56	AG	AG	__	AA	__	__	AG	AA	AA	AT	GG	X_X	X_X	X_X
16._MITC-000064	AG	AG	__	AA	__	__	AG	AA	AA	AT	GG	X_X	X_X	X_X
17._UF_676_Fld#_180_Plt#_2	AG	AG	__	AA	__	__	AG	AA	AA	AT	GG	X_X	X_X	X_X

Input profile: UF_676 GC-08-080-2-03

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

1._UF_676 GC-08-080-2-03

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

2._UF_676 GC-08-080-2-03

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

3._UF_676 GC-08-080-2-03

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

4._UF_676

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 3 > FP

Dapeng Zhang, 2016

5._UF_676

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 4 > FP

Dapeng Zhang, 2016

6._UF_676

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 5 > FP

Dapeng Zhang, 2016

7._UF_676

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 7 > FP

Dapeng Zhang, 2016

8._UF_676

98.8 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

9._UF_676 RUQ_56

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._UF_676

98.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0245

Dapeng Zhang, 2016

11._UF_676 RUQ_56

98.1 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

12._UF_676

97.5 %
40 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 293 I-043

Dapeng Zhang, 2016

13._UF_676 RUQ_56

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._UF_676 RUQ_56

90.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

15._UF_676 RUQ_56

56.2 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_676 MITC-000064

56.2 %
81 shared markers

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USDA-SHRS, United States of America

17._UF_676 UF_676_Fld#_180_Plt#_2

56.2 %
81 shared markers

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USDA-TARS, United States of America

Location: Field: 180, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240