SNP Profiles of SIAL 70   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
11._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._BE_10___
AAAATTAA________CCCCGG__CC__
13._BE_10___
AAAATTAA________CCCCGG__CC__
14._BE_10___
AAAATTAA________CCCCGG__CC__
15._BE_10___
AAAATTAA________CCCCGG__CC__
16._BE_10___
AAAATTAA________CCCCGG__CC__
17._BE_10___
AAAATTAA________CCCCGG__CC__
18._BE_10___
AAAATTAA________CCCCGG__CC__
19._BE_10___
AAAATTAA________CCCCGG__CC__
20._BE_10___
AAAATTAA________CCCCGG__CC__
21._BE_10___
AAAATTAA________CCCCGG__CC__
22._BE_10___
AAAATTAA________CCCCGG__CC__
23._BE_10___
AAAATTAA________CCCCGG__CC__
24._BE_10___
AA__TTAA________CCCCGG__CC__
25._BE_10___
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
2._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
3._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
4._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
5._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
6._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
7._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
8._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
9._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
10._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
11._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
12._BE_10___
____AA____GG________TTAA__GG
13._BE_10___
____AA____GG________TTAA__GG
14._BE_10___
____AA____GG________TTAA__GG
15._BE_10___
____AA____GG________TTAA__GG
16._BE_10___
____AA____GG________TTAA__GG
17._BE_10___
____AA____GG________TTAA__GG
18._BE_10___
____AA____GG________TTAA__GG
19._BE_10___
____AA____GG________TTAA__GG
20._BE_10___
____AA____GG________TTAA__GG
21._BE_10___
____AA____GG________TTAA__GG
22._BE_10___
____AA____GG________TTAA__GG
23._BE_10___
____AA____GG________TTAA__GG
24._BE_10___
____AA______________TTAA__GG
25._BE_10___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
2._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
3._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
4._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
5._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
6._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
7._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
8._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
9._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
10._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
11._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
12._BE_10___
AA______CC__GGTT____AA______
13._BE_10___
AA______CC__GGTT____AA______
14._BE_10___
AA______CC__GGTT____AA______
15._BE_10___
AA______CC__GGTT____AA______
16._BE_10___
AA______CC__GGTT____AA______
17._BE_10___
AA______CC__GGTT____AA______
18._BE_10___
AA______CC__GGTT____AA______
19._BE_10___
AA______CC__GGTT____AA______
20._BE_10___
AA______CC__GGTT____AA______
21._BE_10___
AA______CC__GGTT____AA______
22._BE_10___
AA______CC__GGTT____AA______
23._BE_10___
AA______CC__GGTT____AA______
24._BE_10___
AA______CC__GGTT____AA______
25._BE_10___
AAAACCGGCCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
5._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
7._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
8._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
9._BE_10___
GGTTCCAAGG__CCCCGGGGTTTTCCTT
10._BE_10___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
11._BE_10___
GGTTCC__GGAACCCCGGGGTTTT__TT
12._BE_10___
____CC__________________CCTT
13._BE_10___
____CC__________________CCTT
14._BE_10___
____CC__________________CCTT
15._BE_10___
____CC__________________CCTT
16._BE_10___
____CC__________________CCTT
17._BE_10___
____CC__________________CCTT
18._BE_10___
____CC__________________CCTT
19._BE_10___
____CC__________________CCTT
20._BE_10___
____CC__________________CCTT
21._BE_10___
____CC__________________CCTT
22._BE_10___
____CC__________________CCTT
23._BE_10___
____CC____________________TT
24._BE_10___
____CC__________________CCTT
25._BE_10___
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGCCAATTGGGGTT
1._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
2._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
3._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
4._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
5._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
6._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
7._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
8._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
9._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
10._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
11._BE_10___
TTAACCTTCCAAGGGGCCAATTGGGGTT
12._BE_10___
____CC__CCAAGG__CCAATTGG____
13._BE_10___
____CC__CCAAGG__CCAATTGG____
14._BE_10___
____CC__CCAAGG__CCAATTGG____
15._BE_10___
____CC__CCAAGG__CCAATTGG____
16._BE_10___
____CC__CCAAGG__CCAATTGG____
17._BE_10___
____CC__CCAAGG__CCAATTGG____
18._BE_10___
____CC__CCAAGG__CCAATTGG____
19._BE_10___
____CC__CCAAGG__CCAATTGG____
20._BE_10___
____CC__CCAAGG__CCAATTGG____
21._BE_10___
____CC__CCAAGG__CCAATTGG____
22._BE_10___
____CC__CCAAGG__CCAATTGG____
23._BE_10___
____CC__CCAAGG__CCAATTGG____
24._BE_10___
____CC__CCAAGG__CCAATTGG____
25._BE_10___
AAAAGGAAGGAAGGGGCCAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTCCAACCAAAACCGGCCTTAATT
1._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
2._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
3._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
4._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
5._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
6._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
7._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
8._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
9._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
10._BE_10___
CCGGTTCCAACCAAAACCGGCCTTAATT
11._BE_10___
CCGG__CCAACCAAAACCGGCCTTAATT
12._BE_10___
__GGTT__________CCGG______TT
13._BE_10___
__GGTT__________CCGG______TT
14._BE_10___
__GGTT__________CCGG______TT
15._BE_10___
__GGTT__________CCGG______TT
16._BE_10___
__GGTT__________CCGG______TT
17._BE_10___
__GGTT__________CCGG______TT
18._BE_10___
__GGTT__________CCGG______TT
19._BE_10___
__GGTT__________CCGG______TT
20._BE_10___
__GGTT__________CCGG______TT
21._BE_10___
__GGTT__________CCGG______TT
22._BE_10___
__GGTT__________CCGG______TT
23._BE_10___
__GG____________CCGG______TT
24._BE_10___
__AA______________GG______TT
25._BE_10___
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
8._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
9._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
10._BE_10___
TTTTTTAATTCC__TTAAGGX_XX_XX_XX_X
11._BE_10___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
12._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
13._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
14._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
15._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
16._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
17._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
18._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
19._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
20._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
21._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
22._BE_10___
TTTT__AA__CC__TT____X_XX_XX_XX_X
23._BE_10___
TTTT__AA__CCTTTT____X_XX_XX_XX_X
24._BE_10___
TTTT__AA____TT______X_XX_XX_XX_X
25._BE_10___
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: BE_10 GC-08-090-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

14._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

22._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

23._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

24._BE_10

97.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240