SNP Profiles of SIAL 70   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
11._BE_10___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._BE_10___
AAAATTAA________CCCCGG__CC__
13._BE_10___
AAAATTAA________CCCCGG__CC__
14._BE_10___
AAAATTAA________CCCCGG__CC__
15._BE_10___
AAAATTAA________CCCCGG__CC__
16._BE_10___
AAAATTAA________CCCCGG__CC__
17._BE_10___
AAAATTAA________CCCCGG__CC__
18._BE_10___
AAAATTAA________CCCCGG__CC__
19._BE_10___
AAAATTAA________CCCCGG__CC__
20._BE_10___
AAAATTAA________CCCCGG__CC__
21._BE_10___
AAAATTAA________CCCCGG__CC__
22._BE_10___
AAAATTAA________CCCCGG__CC__
23._BE_10___
AAAATTAA________CCCCGG__CC__
24._BE_10___
AA__TTAA________CCCCGG__CC__
25._BE_10___
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
2._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
3._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
4._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
5._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
6._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
7._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
8._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
9._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
10._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
11._BE_10___
AACCAAGGCCGGTTAATTGGTTAACCGG
12._BE_10___
____AA____GG________TTAA__GG
13._BE_10___
____AA____GG________TTAA__GG
14._BE_10___
____AA____GG________TTAA__GG
15._BE_10___
____AA____GG________TTAA__GG
16._BE_10___
____AA____GG________TTAA__GG
17._BE_10___
____AA____GG________TTAA__GG
18._BE_10___
____AA____GG________TTAA__GG
19._BE_10___
____AA____GG________TTAA__GG
20._BE_10___
____AA____GG________TTAA__GG
21._BE_10___
____AA____GG________TTAA__GG
22._BE_10___
____AA____GG________TTAA__GG
23._BE_10___
____AA____GG________TTAA__GG
24._BE_10___
____AA______________TTAA__GG
25._BE_10___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
2._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
3._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
4._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
5._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
6._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
7._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
8._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
9._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
10._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
11._BE_10___
AATTGGGGCCCCGGTTGGTTAATTAACC
12._BE_10___
AA______CC__GGTT____AA______
13._BE_10___
AA______CC__GGTT____AA______
14._BE_10___
AA______CC__GGTT____AA______
15._BE_10___
AA______CC__GGTT____AA______
16._BE_10___
AA______CC__GGTT____AA______
17._BE_10___
AA______CC__GGTT____AA______
18._BE_10___
AA______CC__GGTT____AA______
19._BE_10___
AA______CC__GGTT____AA______
20._BE_10___
AA______CC__GGTT____AA______
21._BE_10___
AA______CC__GGTT____AA______
22._BE_10___
AA______CC__GGTT____AA______
23._BE_10___
AA______CC__GGTT____AA______
24._BE_10___
AA______CC__GGTT____AA______
25._BE_10___
AAAACCGGCCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCGGAACCCCGGGGTTTTTTTTAA
1._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
2._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
3._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
4._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
5._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
6._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
7._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
8._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
9._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
10._BE_10___
GGTTCCGG__CCCCGGGGTTTTTTTTAA
11._BE_10___
GGTTCCGGAACCCCGGGGTTTTTTTTAA
12._BE_10___
____CC________________TT____
13._BE_10___
____CC________________TT____
14._BE_10___
____CC________________TT____
15._BE_10___
____CC________________TT____
16._BE_10___
____CC________________TT____
17._BE_10___
____CC________________TT____
18._BE_10___
____CC________________TT____
19._BE_10___
____CC________________TT____
20._BE_10___
____CC________________TT____
21._BE_10___
____CC________________TT____
22._BE_10___
____CC________________TT____
23._BE_10___
____CC________________TT____
24._BE_10___
____CC________________TT____
25._BE_10___
CC__GGGGAAGG__GGGGAAAAAAAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTCCAAGGGGCCAATTGGGGTTCCGG
1._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
2._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
3._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
4._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
5._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
6._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
7._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
8._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
9._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
10._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
11._BE_10___
CCTTCCAAGGGGCCAATTGGGGTTCCGG
12._BE_10___
CC__CCAAGG__CCAATTGG______GG
13._BE_10___
CC__CCAAGG__CCAATTGG______GG
14._BE_10___
CC__CCAAGG__CCAATTGG______GG
15._BE_10___
CC__CCAAGG__CCAATTGG______GG
16._BE_10___
CC__CCAAGG__CCAATTGG______GG
17._BE_10___
CC__CCAAGG__CCAATTGG______GG
18._BE_10___
CC__CCAAGG__CCAATTGG______GG
19._BE_10___
CC__CCAAGG__CCAATTGG______GG
20._BE_10___
CC__CCAAGG__CCAATTGG______GG
21._BE_10___
CC__CCAAGG__CCAATTGG______GG
22._BE_10___
CC__CCAAGG__CCAATTGG______GG
23._BE_10___
CC__CCAAGG__CCAATTGG______GG
24._BE_10___
CC__CCAAGG__CCAATTGG______AA
25._BE_10___
GGAAGGAAGGGGCCAAAACCGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCAAAACCGGCCTTAATTTTTTTT
1._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
2._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
3._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
4._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
5._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
6._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
7._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
8._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
9._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
10._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
11._BE_10___
CCAACCAAAACCGGCCTTAATTTTTTTT
12._BE_10___
__________CCGG______TTTTTT__
13._BE_10___
__________CCGG______TTTTTT__
14._BE_10___
__________CCGG______TTTTTT__
15._BE_10___
__________CCGG______TTTTTT__
16._BE_10___
__________CCGG______TTTTTT__
17._BE_10___
__________CCGG______TTTTTT__
18._BE_10___
__________CCGG______TTTTTT__
19._BE_10___
__________CCGG______TTTTTT__
20._BE_10___
__________CCGG______TTTTTT__
21._BE_10___
__________CCGG______TTTTTT__
22._BE_10___
__________CCGG______TTTTTT__
23._BE_10___
__________CCGG______TTTTTT__
24._BE_10___
____________GG______TTTTTT__
25._BE_10___
CCAACCAA__CCCCGGTTAAAAAA__AA
 85 86 87 88 89 90 91        
_Input profile
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
6._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
7._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
8._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
9._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
10._BE_10___
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
11._BE_10___
AATTCC__TTAAGGX_XX_XX_XX_XX_XX_XX_X
12._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
13._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
14._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
15._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
16._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
17._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
18._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
19._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
20._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
21._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
22._BE_10___
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
23._BE_10___
AA__CC__TT____X_XX_XX_XX_XX_XX_XX_X
24._BE_10___
AA____TT______X_XX_XX_XX_XX_XX_XX_X
25._BE_10___
____GGAAAATTGGX_XX_XX_XX_XX_XX_XX_X

Input profile: BE_10 GC-08-090-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

14._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

22._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

23._BE_10

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

24._BE_10

97 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71Tcm003s01336581 72Tcm003s07402719 73Tcm001s00947643 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240