SNP Profiles of BE 10   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
11._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._BE_10
AAAATTAA________CCCCGG__CC__
13._BE_10
AAAATTAA________CCCCGG__CC__
14._BE_10
AAAATTAA________CCCCGG__CC__
15._BE_10
AAAATTAA________CCCCGG__CC__
16._BE_10
AAAATTAA________CCCCGG__CC__
17._BE_10
AAAATTAA________CCCCGG__CC__
18._BE_10
AAAATTAA________CCCCGG__CC__
19._BE_10
AAAATTAA________CCCCGG__CC__
20._BE_10
AAAATTAA________CCCCGG__CC__
21._BE_10
AAAATTAA________CCCCGG__CC__
22._BE_10
AAAATTAA________CCCCGG__CC__
23._BE_10
AAAATTAA________CCCCGG__CC__
24._BE_10
AA__TTAA________CCCCGG__CC__
25._GC-08-90-2-13
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
2._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
3._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
4._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
5._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
6._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
7._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
8._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
9._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
10._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
11._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
12._BE_10
____AA____GG________TTAA__GG
13._BE_10
____AA____GG________TTAA__GG
14._BE_10
____AA____GG________TTAA__GG
15._BE_10
____AA____GG________TTAA__GG
16._BE_10
____AA____GG________TTAA__GG
17._BE_10
____AA____GG________TTAA__GG
18._BE_10
____AA____GG________TTAA__GG
19._BE_10
____AA____GG________TTAA__GG
20._BE_10
____AA____GG________TTAA__GG
21._BE_10
____AA____GG________TTAA__GG
22._BE_10
____AA____GG________TTAA__GG
23._BE_10
____AA____GG________TTAA__GG
24._BE_10
____AA______________TTAA__GG
25._GC-08-90-2-13
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
2._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
3._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
4._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
5._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
6._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
7._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
8._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
9._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
10._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
11._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
12._BE_10
AA______CC__GGTT____AA______
13._BE_10
AA______CC__GGTT____AA______
14._BE_10
AA______CC__GGTT____AA______
15._BE_10
AA______CC__GGTT____AA______
16._BE_10
AA______CC__GGTT____AA______
17._BE_10
AA______CC__GGTT____AA______
18._BE_10
AA______CC__GGTT____AA______
19._BE_10
AA______CC__GGTT____AA______
20._BE_10
AA______CC__GGTT____AA______
21._BE_10
AA______CC__GGTT____AA______
22._BE_10
AA______CC__GGTT____AA______
23._BE_10
AA______CC__GGTT____AA______
24._BE_10
AA______CC__GGTT____AA______
25._GC-08-90-2-13
AAAACCGGCCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
1._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
2._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
3._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
4._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
5._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
6._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
7._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
8._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
9._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
10._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
11._GC-08-090-2-13
GGTTCC__GGCCCCGGGGTTTT__TTTT
12._BE_10
____CC________________CCTT__
13._BE_10
____CC________________CCTT__
14._BE_10
____CC________________CCTT__
15._BE_10
____CC________________CCTT__
16._BE_10
____CC________________CCTT__
17._BE_10
____CC________________CCTT__
18._BE_10
____CC________________CCTT__
19._BE_10
____CC________________CCTT__
20._BE_10
____CC________________CCTT__
21._BE_10
____CC________________CCTT__
22._BE_10
____CC________________CCTT__
23._BE_10
____CC__________________TT__
24._BE_10
____CC________________CCTT__
25._GC-08-90-2-13
CC__GG__GGGG__GGGGAAAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AACCTTCCAAGGGGCCAATTGGGGTTCC
1._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
2._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
3._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
4._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
5._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
6._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
7._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
8._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
9._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
10._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
11._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
12._BE_10
__CC__CCAAGG__CCAATTGG______
13._BE_10
__CC__CCAAGG__CCAATTGG______
14._BE_10
__CC__CCAAGG__CCAATTGG______
15._BE_10
__CC__CCAAGG__CCAATTGG______
16._BE_10
__CC__CCAAGG__CCAATTGG______
17._BE_10
__CC__CCAAGG__CCAATTGG______
18._BE_10
__CC__CCAAGG__CCAATTGG______
19._BE_10
__CC__CCAAGG__CCAATTGG______
20._BE_10
__CC__CCAAGG__CCAATTGG______
21._BE_10
__CC__CCAAGG__CCAATTGG______
22._BE_10
__CC__CCAAGG__CCAATTGG______
23._BE_10
__CC__CCAAGG__CCAATTGG______
24._BE_10
__CC__CCAAGG__CCAATTGG______
25._GC-08-90-2-13
AAGGAAGGAAGGGGCCAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTCCAACCAAAACCGGCCTTAATTTT
1._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
2._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
3._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
4._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
5._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
6._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
7._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
8._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
9._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
10._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
11._GC-08-090-2-13
GG__CCAACCAAAACCGGCCTTAATTTT
12._BE_10
GGTT__________CCGG______TTTT
13._BE_10
GGTT__________CCGG______TTTT
14._BE_10
GGTT__________CCGG______TTTT
15._BE_10
GGTT__________CCGG______TTTT
16._BE_10
GGTT__________CCGG______TTTT
17._BE_10
GGTT__________CCGG______TTTT
18._BE_10
GGTT__________CCGG______TTTT
19._BE_10
GGTT__________CCGG______TTTT
20._BE_10
GGTT__________CCGG______TTTT
21._BE_10
GGTT__________CCGG______TTTT
22._BE_10
GGTT__________CCGG______TTTT
23._BE_10
GG____________CCGG______TTTT
24._BE_10
AA______________GG______TTTT
25._GC-08-90-2-13
__AACCAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
10._GC-08-090-2-13
TTTTAATTCC__TTAAGGX_XX_XX_XX_XX_X
11._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
13._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
14._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
15._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
16._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
17._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
18._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
19._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
20._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
21._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
22._BE_10
TT__AA__CC__TT____X_XX_XX_XX_XX_X
23._BE_10
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
24._BE_10
TT__AA____TT______X_XX_XX_XX_XX_X
25._GC-08-90-2-13
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: BE_10 GC-08-090-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

1._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

14._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

22._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

23._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

24._BE_10

97.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240