SNP Profiles of SCA 24   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
1._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
2._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
3._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
4._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
5._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
6._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
7._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
8._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
9._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
10._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
11._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
12._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
13._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
14._SCA_11___
ATCCCCCCAGAGTTTTCCTTTT__TTAT
15._SCA_11___
AT__CCCCAGAGTTTTCCTTTTTTTTAT
16._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
17._SCA_11___
ATCCCCCCAG__TTTTCCTTTTTTTTAT
18._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
19._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
20._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
21._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
22._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
23._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
24._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
25._SCA_11___
ATCCCCCCAGAGTTTTCCTTTTTTTTAT
26._SCA_11___
ATCCCCCC________CCTT__TT____
27._SCA_11___
ATCCCCCC________CCTT__TT____
28._SCA_11___
ATCCCCCC________CCTT__TT____
29._SCA_11___
ATCCCCCC________CCTT__TT____
30._SCA_11___
ATCCCCCC________CCTT__TT____
31._SCA_11___
ATCCCCCC________CCTT__TT____
32._SCA_11___
ATCCCCCC________CCTT__TT____
33._SCA_11___
ATCCCCCC________CCTT__TT____
34._SCA_11___
ATCCCCCC________CCTT__TT____
35._SCA_11___
ATCCCCCC________CCTT__TT____
36._SCA_11___
ATCCCCCC________CCTT__TT____
37._SCA_11___
ATCCCCCC________CCTT__TT____
38._SCA_11___
ATCCCCCC________CCTT__TT____
39._SCA_11___
ATCCCCCC________CCTT__TT____
40._SCA_11___
ATCCCCCC________CCTT__TT____
41._SCA_11___
ATCCCCCC________CCTT__TT____
42._SCA_11___
ATCCCCCC________CCTT__TT____
43._SCA_11___
ATCCCCCC________CCTT__TT____
44._SCA_11___
ATCCCCCC________CCTT__TT____
45._SCA_11___
ATCCCCCC________CCTT__TT____
46._SCA_11___
ATCCCCCC________CCTT__TT____
47._SCA_11___
ATCCCCCC________CCTT__TT____
48._SCA_11___
ATCCCCCC________CCTT________
49._SCA_11___
AT__CCCC________CCTT__TT____
50._SCA_11___
ATCCCCCC________CCTT__TT____
51._SCA_11___
ATCCCCCC________CCTT__TT____
52._SCA_11___
______CC____CT______________
53._SCA_11___
AACCCCCC________CCCT__TT____
54._SCA_11___
AACCCCCC________CCTT__TT____
55._SCA_11___
____CCCC____CC__CC__TTTT____
56._SCA_11___
______AA________CC____CT____
57._SCA_11___
ATCC__CCAGAG__AAGG__AAAAAAAT
58._SCA_11___
AACC__CCGGAA__AAGG__AAAAAAAA
59._SCA_11___
AAAATTCC________CTTT__CC____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCCGCCCCAACTGGAAAAGGCC
1._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
2._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
3._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
4._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
5._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
6._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
7._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
8._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
9._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
10._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
11._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
12._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
13._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
14._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
15._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
16._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
17._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
18._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
19._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
20._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
21._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGG__
22._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
23._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
24._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGGCC
25._SCA_11___
AAAAGGCCCGCCCCAACTGGAAAAGG__
26._SCA_11___
____GG____CC________AAAA__CC
27._SCA_11___
____GG____CC________AAAA__CC
28._SCA_11___
____GG____CC________AAAA__CC
29._SCA_11___
____GG____CC________AAAA__CC
30._SCA_11___
____GG____CC________AAAA__CC
31._SCA_11___
____GG____CC________AAAA__CC
32._SCA_11___
____GG____CC________AAAA__CC
33._SCA_11___
____GG____CC________AAAA__CC
34._SCA_11___
____GG____CC________AAAA__CC
35._SCA_11___
____GG____CC________AAAA__CC
36._SCA_11___
____GG____CC________AAAA__CC
37._SCA_11___
____GG____CC________AAAA__CC
38._SCA_11___
____GG____CC________AAAA__CC
39._SCA_11___
____GG____CC________AAAA__CC
40._SCA_11___
____GG____CC________AAAA__CC
41._SCA_11___
____GG____CC________AAAA__CC
42._SCA_11___
____GG____CC________AAAA__CC
43._SCA_11___
____GG____CC________AAAA__CC
44._SCA_11___
____GG____CC________AAAA__CC
45._SCA_11___
____GG____CC________AAAA__CC
46._SCA_11___
____GG____CC________AAAA__CC
47._SCA_11___
____GG____CC________AAAA____
48._SCA_11___
____GG____CC________AAAA__CC
49._SCA_11___
____GG____CC________AAAA__CC
50._SCA_11___
____GG____CC________AAAA__CC
51._SCA_11___
____GG____CC________AAAA____
52._SCA_11___
____GGCC__________________CC
53._SCA_11___
____GG____CC________AAAA__CC
54._SCA_11___
____GG____CC________AAAA__CC
55._SCA_11___
________GG________GG__AAGGCC
56._SCA_11___
__GG____GG__CT____GG__ATCCGG
57._SCA_11___
AAAAGGGG__CCGGAAAGGGAAAACCGG
58._SCA_11___
ACAAGGGG__CCGGAGGGGGAAAA__GG
59._SCA_11___
____AA____GG________TTAT__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
1._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
2._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
3._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
4._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
5._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
6._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
7._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
8._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
9._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
10._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
11._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
12._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
13._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
14._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
15._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
16._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
17._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
18._SCA_11___
TTTTTTGGCG__AAGGTTTTAGCCGGCC
19._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCC__CC
20._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
21._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
22._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
23._SCA_11___
TTTTTTGGCGCCAAGGTT__AGCCGGCC
24._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
25._SCA_11___
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
26._SCA_11___
TT______CG__AAGG____AG______
27._SCA_11___
TT______CG__AAGG____AG______
28._SCA_11___
TT______CG__AAGG____AG______
29._SCA_11___
TT______CG__AAGG____AG______
30._SCA_11___
TT______CG__AAGG____AG______
31._SCA_11___
TT______CG__AAGG____AG______
32._SCA_11___
TT______CG__AAGG____AG______
33._SCA_11___
TT______CG__AAGG____AG______
34._SCA_11___
TT______CG__AAGG____AG______
35._SCA_11___
TT______CG__AAGG____AG______
36._SCA_11___
TT______CG__AAGG____AG______
37._SCA_11___
TT______CG__AAGG____AG______
38._SCA_11___
TT______CG__AAGG____AG______
39._SCA_11___
TT______CG__AAGG____AG______
40._SCA_11___
TT______CG__AAGG____AG______
41._SCA_11___
TT______CG__AAGG____AG______
42._SCA_11___
TT______CG__AAGG____AG______
43._SCA_11___
TT______CG__AAGG____AG______
44._SCA_11___
TT______CG__AAGG____AG______
45._SCA_11___
TT______CG__AAGG____AG______
46._SCA_11___
TT______CG__AAGG____AG______
47._SCA_11___
TT______CG__AAGG____AG______
48._SCA_11___
TT______CG__AAGG____AG______
49._SCA_11___
TT______CG__AAGG____AG______
50._SCA_11___
TT______CG__AAGG____AG______
51._SCA_11___
TT______CG__AAGG____AG______
52._SCA_11___
________CG__AA________CC____
53._SCA_11___
TT______CC__AAGG____AG______
54._SCA_11___
TT______CC__AAGG____AA______
55._SCA_11___
______AGCCCCAAGG____AACC____
56._SCA_11___
______GGGG________TT__CC____
57._SCA_11___
TTAAAAGGCGCCAACCAAAAAGGGGGGG
58._SCA_11___
TTAAAAAGCCCCAACCAAAAAAGGGGGG
59._SCA_11___
AA______CC__AATT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAGAACCCCAAAAGGTTTTCC
1._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
2._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
3._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
4._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
5._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
6._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
7._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
8._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
9._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
10._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
11._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
12._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
13._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
14._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
15._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
16._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
17._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
18._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
19._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
20._SCA_11___
GGTTTTGGAG__CCCCAAAAGGTTTTCC
21._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
22._SCA_11___
GGTTTTGGAG__CCCCAAAAGGTTTTCC
23._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
24._SCA_11___
GGTTTTGGAGAACCCCAAAAGG__TTCC
25._SCA_11___
GGTTTTGGAGAACCCCAAAAGGTTTTCC
26._SCA_11___
____TT__________________TTCC
27._SCA_11___
____TT__________________TTCC
28._SCA_11___
____TT__________________TTCC
29._SCA_11___
____TT__________________TTCC
30._SCA_11___
____TT__________________TTCC
31._SCA_11___
____TT__________________TTCC
32._SCA_11___
____TT__________________TTCC
33._SCA_11___
____TT__________________TTCC
34._SCA_11___
____TT__________________TTCC
35._SCA_11___
____TT__________________TTCC
36._SCA_11___
____TT__________________TTCC
37._SCA_11___
____TT__________________TTCC
38._SCA_11___
____TT__________________TTCC
39._SCA_11___
____TT__________________TTCC
40._SCA_11___
____TT__________________TTCC
41._SCA_11___
____TT__________________TTCC
42._SCA_11___
____TT__________________TTCC
43._SCA_11___
____TT__________________TTCC
44._SCA_11___
____TT__________________TTCC
45._SCA_11___
____TT__________________TTCC
46._SCA_11___
____TT__________________TTCC
47._SCA_11___
____TT__________________TTCC
48._SCA_11___
____TT__________________TTCC
49._SCA_11___
____TT__________________TTCC
50._SCA_11___
____TT__________________TTCC
51._SCA_11___
____TT__________________TTCC
52._SCA_11___
________AG__________________
53._SCA_11___
____TT__________________TTCC
54._SCA_11___
____TT__________________TTCC
55._SCA_11___
GGTT____AA____________CCTT__
56._SCA_11___
__TT__AA________________CC__
57._SCA_11___
CC__AA__AGAAGG__AAAACCAGAAGG
58._SCA_11___
CC__AA__AAAAGG__AAAACCGGAAGG
59._SCA_11___
____CC__________________CTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCCTTCCCGGGAAAAGGGGAACT
1._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
2._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
3._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
4._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
5._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
6._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
7._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
8._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
9._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
10._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
11._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
12._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
13._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
14._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
15._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
16._SCA_11___
TTAGCCCCTTCCCGGGAAAA__GGAACT
17._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
18._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
19._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
20._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
21._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
22._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
23._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
24._SCA_11___
TT__CCCCTTCCCGGGAAAAGGGGAACT
25._SCA_11___
TTAGCCCCTTCCCGGGAAAAGGGGAACT
26._SCA_11___
____CC__TTCCCG__AAAAGGGG____
27._SCA_11___
____CC__TTCCCG__AAAAGGGG____
28._SCA_11___
____CC__TTCCCG__AAAAGGGG____
29._SCA_11___
____CC__TTCCCG__AAAAGGGG____
30._SCA_11___
____CC__TTCCCG__AAAAGGGG____
31._SCA_11___
____CC__TTCCCG__AAAAGGGG____
32._SCA_11___
____CC__TTCCCG__AAAAGGGG____
33._SCA_11___
____CC__TTCCCG__AAAAGGGG____
34._SCA_11___
____CC__TTCCCG__AAAAGGGG____
35._SCA_11___
____CC__TTCCCG__AAAAGGGG____
36._SCA_11___
____CC__TTCCCG__AAAAGGGG____
37._SCA_11___
____CC__TTCCCG__AAAAGGGG____
38._SCA_11___
____CC__TTCCCG__AAAAGGGG____
39._SCA_11___
____CC__TTCCCG__AAAAGGGG____
40._SCA_11___
____CC__TTCCCG__AAAAGGGG____
41._SCA_11___
____CC__TTCCCG__AAAAGGGG____
42._SCA_11___
____CC__TTCCCG__AAAAGGGG____
43._SCA_11___
____CC__TTCCCG__AAAAGGGG____
44._SCA_11___
____CC__TTCCCG__AAAAGGGG____
45._SCA_11___
____CC__TTCCCG__AAAAGGGG____
46._SCA_11___
____CC__TTCCCG__AAAAGGGG____
47._SCA_11___
____CC__TTCCCG__AAAAGGGG____
48._SCA_11___
____CC__TTCCCG__AAAAGGGG____
49._SCA_11___
____CC__TTCCCG__AAAAGGGG____
50._SCA_11___
____CC__TTCCCG__AAAA__GG____
51._SCA_11___
____CC__TTCCCG__AAAAGGGG____
52._SCA_11___
__AG____________AAAA__GGAA__
53._SCA_11___
____CG__TTCCCG__ACAGGGGG____
54._SCA_11___
____CG__TTCCCG__ACAGGGGG____
55._SCA_11___
TT__CGCCTTCC__GGCCAGGGGGAA__
56._SCA_11___
____CGCC__AA__GGACAG________
57._SCA_11___
AAAGGGGGAACCCGGGAAAACCCCAA__
58._SCA_11___
AAAGCGGGAACCCGGGACAGCCCCAA__
59._SCA_11___
____CC__CTACGG__CCAATTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTCCGGCCCCAAAACCCCAACCTT
1._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
2._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
3._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
4._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
5._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
6._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
7._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
8._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
9._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
10._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
11._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
12._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
13._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
14._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
15._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
16._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
17._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
18._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
19._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
20._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
21._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
22._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
23._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
24._SCA_11___
CCAACTCCGGCCCCAAAACCCCAACCTT
25._SCA_11___
CCAA__CCGGCCCCAAAACCCCAACCTT
26._SCA_11___
__AACT__________AACC______TT
27._SCA_11___
__AACT__________AACC______TT
28._SCA_11___
__AACT__________AACC______TT
29._SCA_11___
__AACT__________AACC______TT
30._SCA_11___
__AACT__________AACC______TT
31._SCA_11___
__AACT__________AACC______TT
32._SCA_11___
__AACT__________AACC______TT
33._SCA_11___
__AACT__________AACC______TT
34._SCA_11___
__AACT__________AACC______TT
35._SCA_11___
__AACT__________AACC______TT
36._SCA_11___
__AACT__________AACC______TT
37._SCA_11___
__AACT__________AACC______TT
38._SCA_11___
__AACT__________AACC______TT
39._SCA_11___
__AACT__________AACC______TT
40._SCA_11___
__AACT__________AACC______TT
41._SCA_11___
__AACT__________AACC______TT
42._SCA_11___
__AACT__________AACC______TT
43._SCA_11___
__AACT__________AACC______TT
44._SCA_11___
__AACT__________AACC______TT
45._SCA_11___
__AACT__________AACC______TT
46._SCA_11___
__AACT__________AACC______TT
47._SCA_11___
__AACT__________AACC______TT
48._SCA_11___
__AACT__________AACC______TT
49._SCA_11___
__AACT__________AACC______TT
50._SCA_11___
__AACT__________AACC______TT
51._SCA_11___
__AA____________AACC______TT
52._SCA_11___
__AG____________AACC____CC__
53._SCA_11___
__GGCC__________AACC______TT
54._SCA_11___
__GGCC__________AACC______TT
55._SCA_11___
________________AACC____CCTT
56._SCA_11___
CG________________GG________
57._SCA_11___
____AGCCGGCCCC__AAGGGGAACCAA
58._SCA_11___
____GGCCGGCCCC__AAGGGGAACCAA
59._SCA_11___
__AATT__________CCGG______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
1._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
2._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
3._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
4._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
5._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
6._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
7._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
8._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
9._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
10._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
11._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
12._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
13._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
14._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
15._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
16._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
17._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
18._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
19._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
20._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
21._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
22._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
23._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
24._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
25._SCA_11___
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
26._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
27._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
28._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
29._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
30._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
31._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
32._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
33._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
34._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
35._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
36._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
37._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
38._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
39._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
40._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
41._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
42._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
43._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
44._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
45._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
46._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
47._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
48._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
49._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
50._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
51._SCA_11___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
52._SCA_11___
__CC____CC__GG______X_XX_XX_XX_X
53._SCA_11___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
54._SCA_11___
CCCC__GG__CTGTCT____X_XX_XX_XX_X
55._SCA_11___
______GGCCCTGT______X_XX_XX_XX_X
56._SCA_11___
CT__________________X_XX_XX_XX_X
57._SCA_11___
GG__GG____AACCGGAAGGX_XX_XX_XX_X
58._SCA_11___
GG__GG____AGACAGAAGGX_XX_XX_XX_X
59._SCA_11___
CTTT__AG__CTGGTT____X_XX_XX_XX_X

Input profile: SCA_11 GC-08-157-3-56

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._SCA_11 GC-01-117-6-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

27._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

28._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

29._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

30._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

31._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

32._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

33._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

34._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

35._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

36._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

37._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

38._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

39._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

40._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

41._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

42._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

43._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

44._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

45._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

47._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

48._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016

49._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_1686

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

53._SCA_11 RUQ_374

84.6 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

54._SCA_11

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

55._SCA_11 RUQ_374

82.1 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

56._SCA_11 RUQ_1686

50 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

57._SCA_11 RUQ_1686

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

58._SCA_11 MITC-000057

43.7 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

59._SCA_11

39.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240