SNP Profiles of SCA 11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
1._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
2._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
3._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
4._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
5._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
6._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
7._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
8._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
9._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
10._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
11._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
12._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
13._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
14._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTT__TT
15._GC-08-157-3-56
AT__CCCCAGAGTTTTCCTTAGTTTTTT
16._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
17._GC-08-157-3-56
ATCCCCCCAG__TTTTCCTTAGTTTTTT
18._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
19._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
20._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
21._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTT__TTTTTT
22._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
23._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
24._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
25._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
26._SCA_11
ATCCCCCC________CCTTAG__TT__
27._SCA_11
ATCCCCCC________CCTTAG__TT__
28._SCA_11
ATCCCCCC________CCTTAG__TT__
29._SCA_11
ATCCCCCC________CCTTAG__TT__
30._SCA_11
ATCCCCCC________CCTTAG__TT__
31._SCA_11
ATCCCCCC________CCTTAG__TT__
32._SCA_11
ATCCCCCC________CCTTAG__TT__
33._SCA_11
ATCCCCCC________CCTTAG__TT__
34._SCA_11
ATCCCCCC________CCTTAG__TT__
35._SCA_11
ATCCCCCC________CCTTAG__TT__
36._SCA_11
ATCCCCCC________CCTTAG__TT__
37._SCA_11
ATCCCCCC________CCTTAG__TT__
38._SCA_11
ATCCCCCC________CCTTAG__TT__
39._SCA_11
ATCCCCCC________CCTTAG__TT__
40._SCA_11
ATCCCCCC________CCTTAG__TT__
41._SCA_11
ATCCCCCC________CCTTAG__TT__
42._SCA_11
ATCCCCCC________CCTTAG__TT__
43._SCA_11
ATCCCCCC________CCTTAG__TT__
44._SCA_11
ATCCCCCC________CCTTAG__TT__
45._SCA_11
ATCCCCCC________CCTTAG__TT__
46._SCA_11
ATCCCCCC________CCTT____TT__
47._SCA_11
ATCCCCCC________CCTTAG__TT__
48._SCA_11
ATCCCCCC________CCTTAG______
49._SCA_11
AT__CCCC________CCTTAG__TT__
50._SCA_11
ATCCCCCC________CCTTAG__TT__
51._SCA_11
ATCCCCCC________CCTTAG__TT__
52._RUQ_1686
______CC____CT______________
53._RUQ_374
AACCCCCC________CCCTAA__TT__
54._SCA_11
AACCCCCC________CCTTAA__TT__
55._RUQ_374
____CCCC____CC__CC____TTTT__
56._RUQ_1686
______AA________CC______CT__
57._RUQ_1686
ATCC__CCAGAG__AAGG__AGAAAAAA
58._MITC-000057
AACC__CCGGAA__AAGG__AAAAAAAA
59._SCA_11
AAAATTCC________CTTTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
13._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
14._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
15._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
16._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
17._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
18._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
19._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
20._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
21._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
22._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
23._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
24._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
25._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
26._SCA_11
______GG____CC________AAAA__
27._SCA_11
______GG____CC________AAAA__
28._SCA_11
______GG____CC________AAAA__
29._SCA_11
______GG____CC________AAAA__
30._SCA_11
______GG____CC________AAAA__
31._SCA_11
______GG____CC________AAAA__
32._SCA_11
______GG____CC________AAAA__
33._SCA_11
______GG____CC________AAAA__
34._SCA_11
______GG____CC________AAAA__
35._SCA_11
______GG____CC________AAAA__
36._SCA_11
______GG____CC________AAAA__
37._SCA_11
______GG____CC________AAAA__
38._SCA_11
______GG____CC________AAAA__
39._SCA_11
______GG____CC________AAAA__
40._SCA_11
______GG____CC________AAAA__
41._SCA_11
______GG____CC________AAAA__
42._SCA_11
______GG____CC________AAAA__
43._SCA_11
______GG____CC________AAAA__
44._SCA_11
______GG____CC________AAAA__
45._SCA_11
______GG____CC________AAAA__
46._SCA_11
______GG____CC________AAAA__
47._SCA_11
______GG____CC________AAAA__
48._SCA_11
______GG____CC________AAAA__
49._SCA_11
______GG____CC________AAAA__
50._SCA_11
______GG____CC________AAAA__
51._SCA_11
______GG____CC________AAAA__
52._RUQ_1686
______GGCC__________________
53._RUQ_374
______GG____CC________AAAA__
54._SCA_11
______GG____CC________AAAA__
55._RUQ_374
__________GG________GG__AAGG
56._RUQ_1686
____GG____GG__CT____GG__ATCC
57._RUQ_1686
ATAAAAGGGG__CCGGAAAGGGAAAACC
58._MITC-000057
AAACAAGGGG__CCGGAGGGGGAAAA__
59._SCA_11
______AA____GG________TTAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
1._GC-01-117-6-14
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
2._GC-01-117-6-14
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
3._GC-01-117-6-14
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
4._GC-01-117-6-14
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
5._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
6._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
7._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
8._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
9._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
10._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
11._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
12._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
13._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
14._GC-01-117-6-14
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
15._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
16._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
17._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
18._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCC__CC
19._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
20._GC-08-157-3-56
__TTTTTTGGCGAAGGTTTTAGCCGGCC
21._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
22._GC-08-157-3-56
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
23._GC-08-157-3-56
CCTTTTTTGGCGAAGGTT__AGCCGGCC
24._GC-01-117-6-14
CCTTTTTTGGCGAAGGTTTTAGCCGGCC
25._GC-08-157-3-56
__TTTTTTGGCGAAGGTTTTAGCCGGCC
26._SCA_11
CCTT______CGAAGG____AG______
27._SCA_11
CCTT______CGAAGG____AG______
28._SCA_11
CCTT______CGAAGG____AG______
29._SCA_11
CCTT______CGAAGG____AG______
30._SCA_11
CCTT______CGAAGG____AG______
31._SCA_11
CCTT______CGAAGG____AG______
32._SCA_11
CCTT______CGAAGG____AG______
33._SCA_11
CCTT______CGAAGG____AG______
34._SCA_11
CCTT______CGAAGG____AG______
35._SCA_11
CCTT______CGAAGG____AG______
36._SCA_11
CCTT______CGAAGG____AG______
37._SCA_11
CCTT______CGAAGG____AG______
38._SCA_11
CCTT______CGAAGG____AG______
39._SCA_11
CCTT______CGAAGG____AG______
40._SCA_11
CCTT______CGAAGG____AG______
41._SCA_11
CCTT______CGAAGG____AG______
42._SCA_11
CCTT______CGAAGG____AG______
43._SCA_11
CCTT______CGAAGG____AG______
44._SCA_11
CCTT______CGAAGG____AG______
45._SCA_11
CCTT______CGAAGG____AG______
46._SCA_11
CCTT______CGAAGG____AG______
47._SCA_11
__TT______CGAAGG____AG______
48._SCA_11
CCTT______CGAAGG____AG______
49._SCA_11
CCTT______CGAAGG____AG______
50._SCA_11
CCTT______CGAAGG____AG______
51._SCA_11
__TT______CGAAGG____AG______
52._RUQ_1686
CC________CGAA________CC____
53._RUQ_374
CCTT______CCAAGG____AG______
54._SCA_11
CCTT______CCAAGG____AA______
55._RUQ_374
CC______AGCCAAGG____AACC____
56._RUQ_1686
GG______GGGG______TT__CC____
57._RUQ_1686
GGTTAAAAGGCGAACCAAAAAGGGGGGG
58._MITC-000057
GGTTAAAAAGCCAACCAAAAAAGGGGGG
59._SCA_11
CGAA______CCAATT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAGAACCCCAAAAGGTTTTCC
1._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
2._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
3._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
4._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
5._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
6._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
7._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
8._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
9._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
10._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
11._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
12._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
13._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
14._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
15._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
16._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
17._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
18._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
19._GC-08-157-3-56
GGTTTTGGAG__CCCCAAAAGGTTTTCC
20._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
21._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
22._GC-08-157-3-56
GGTTTTGGAG__CCCCAAAAGGTTTTCC
23._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
24._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGG__TTCC
25._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
26._SCA_11
____TT__________________TTCC
27._SCA_11
____TT__________________TTCC
28._SCA_11
____TT__________________TTCC
29._SCA_11
____TT__________________TTCC
30._SCA_11
____TT__________________TTCC
31._SCA_11
____TT__________________TTCC
32._SCA_11
____TT__________________TTCC
33._SCA_11
____TT__________________TTCC
34._SCA_11
____TT__________________TTCC
35._SCA_11
____TT__________________TTCC
36._SCA_11
____TT__________________TTCC
37._SCA_11
____TT__________________TTCC
38._SCA_11
____TT__________________TTCC
39._SCA_11
____TT__________________TTCC
40._SCA_11
____TT__________________TTCC
41._SCA_11
____TT__________________TTCC
42._SCA_11
____TT__________________TTCC
43._SCA_11
____TT__________________TTCC
44._SCA_11
____TT__________________TTCC
45._SCA_11
____TT__________________TTCC
46._SCA_11
____TT__________________TTCC
47._SCA_11
____TT__________________TTCC
48._SCA_11
____TT__________________TTCC
49._SCA_11
____TT__________________TTCC
50._SCA_11
____TT__________________TTCC
51._SCA_11
____TT__________________TTCC
52._RUQ_1686
________AG__________________
53._RUQ_374
____TT__________________TTCC
54._SCA_11
____TT__________________TTCC
55._RUQ_374
GGTT____AA____________CCTT__
56._RUQ_1686
__TT__AA________________CC__
57._RUQ_1686
CC__AA__AGAAGG__AAAACCAGAAGG
58._MITC-000057
CC__AA__AAAAGG__AAAACCGGAAGG
59._SCA_11
____CC__________________CTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCCTTCCCGGGAAAAGGGGAACT
1._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
2._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
3._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
4._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
5._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
6._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
7._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
8._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
9._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
10._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
11._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
12._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
13._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
14._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
15._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
16._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAA__GGAACT
17._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
18._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
19._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
20._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
21._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
22._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
23._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
24._GC-01-117-6-14
TT__CCCCTTCCCGGGAAAAGGGGAACT
25._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
26._SCA_11
____CC__TTCCCG__AAAAGGGG____
27._SCA_11
____CC__TTCCCG__AAAAGGGG____
28._SCA_11
____CC__TTCCCG__AAAAGGGG____
29._SCA_11
____CC__TTCCCG__AAAAGGGG____
30._SCA_11
____CC__TTCCCG__AAAAGGGG____
31._SCA_11
____CC__TTCCCG__AAAAGGGG____
32._SCA_11
____CC__TTCCCG__AAAAGGGG____
33._SCA_11
____CC__TTCCCG__AAAAGGGG____
34._SCA_11
____CC__TTCCCG__AAAAGGGG____
35._SCA_11
____CC__TTCCCG__AAAAGGGG____
36._SCA_11
____CC__TTCCCG__AAAAGGGG____
37._SCA_11
____CC__TTCCCG__AAAAGGGG____
38._SCA_11
____CC__TTCCCG__AAAAGGGG____
39._SCA_11
____CC__TTCCCG__AAAAGGGG____
40._SCA_11
____CC__TTCCCG__AAAAGGGG____
41._SCA_11
____CC__TTCCCG__AAAAGGGG____
42._SCA_11
____CC__TTCCCG__AAAAGGGG____
43._SCA_11
____CC__TTCCCG__AAAAGGGG____
44._SCA_11
____CC__TTCCCG__AAAAGGGG____
45._SCA_11
____CC__TTCCCG__AAAAGGGG____
46._SCA_11
____CC__TTCCCG__AAAAGGGG____
47._SCA_11
____CC__TTCCCG__AAAAGGGG____
48._SCA_11
____CC__TTCCCG__AAAAGGGG____
49._SCA_11
____CC__TTCCCG__AAAAGGGG____
50._SCA_11
____CC__TTCCCG__AAAA__GG____
51._SCA_11
____CC__TTCCCG__AAAAGGGG____
52._RUQ_1686
__AG____________AAAA__GGAA__
53._RUQ_374
____CG__TTCCCG__ACAGGGGG____
54._SCA_11
____CG__TTCCCG__ACAGGGGG____
55._RUQ_374
TT__CGCCTTCC__GGCCAGGGGGAA__
56._RUQ_1686
____CGCC__AA__GGACAG________
57._RUQ_1686
AAAGGGGGAACCCGGGAAAACCCCAA__
58._MITC-000057
AAAGCGGGAACCCGGGACAGCCCCAA__
59._SCA_11
____CC__CTACGG__CCAATTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTCCGGCCCCAAAACCCCAACCTT
1._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
2._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
3._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
4._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
5._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
6._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
7._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
8._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
9._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
10._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
11._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
12._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
13._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
14._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
15._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
16._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
17._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
18._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
19._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
20._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
21._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
22._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
23._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
24._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
25._GC-08-157-3-56
CCAA__CCGGCCCCAAAACCCCAACCTT
26._SCA_11
__AACT__________AACC______TT
27._SCA_11
__AACT__________AACC______TT
28._SCA_11
__AACT__________AACC______TT
29._SCA_11
__AACT__________AACC______TT
30._SCA_11
__AACT__________AACC______TT
31._SCA_11
__AACT__________AACC______TT
32._SCA_11
__AACT__________AACC______TT
33._SCA_11
__AACT__________AACC______TT
34._SCA_11
__AACT__________AACC______TT
35._SCA_11
__AACT__________AACC______TT
36._SCA_11
__AACT__________AACC______TT
37._SCA_11
__AACT__________AACC______TT
38._SCA_11
__AACT__________AACC______TT
39._SCA_11
__AACT__________AACC______TT
40._SCA_11
__AACT__________AACC______TT
41._SCA_11
__AACT__________AACC______TT
42._SCA_11
__AACT__________AACC______TT
43._SCA_11
__AACT__________AACC______TT
44._SCA_11
__AACT__________AACC______TT
45._SCA_11
__AACT__________AACC______TT
46._SCA_11
__AACT__________AACC______TT
47._SCA_11
__AACT__________AACC______TT
48._SCA_11
__AACT__________AACC______TT
49._SCA_11
__AACT__________AACC______TT
50._SCA_11
__AACT__________AACC______TT
51._SCA_11
__AA____________AACC______TT
52._RUQ_1686
__AG____________AACC____CC__
53._RUQ_374
__GGCC__________AACC______TT
54._SCA_11
__GGCC__________AACC______TT
55._RUQ_374
________________AACC____CCTT
56._RUQ_1686
CG________________GG________
57._RUQ_1686
____AGCCGGCCCC__AAGGGGAACCAA
58._MITC-000057
____GGCCGGCCCC__AAGGGGAACCAA
59._SCA_11
__AATT__________CCGG______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
1._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
2._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
3._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
4._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
5._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
6._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
7._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
8._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
9._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
10._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
11._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
12._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
13._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
14._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
15._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
16._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
17._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
18._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
19._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
20._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
21._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
22._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
23._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
24._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
25._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
26._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
27._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
28._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
29._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
30._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
31._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
32._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
33._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
34._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
35._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
36._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
37._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
38._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
39._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
40._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
41._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
42._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
43._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
44._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
45._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
46._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
47._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
48._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
49._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
50._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
51._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
52._RUQ_1686
__CC____CC__GG______X_XX_XX_XX_X
53._RUQ_374
CCCC__GG__CTGTCT____X_XX_XX_XX_X
54._SCA_11
CCCC__GG__CTGTCT____X_XX_XX_XX_X
55._RUQ_374
______GGCCCTGT______X_XX_XX_XX_X
56._RUQ_1686
CT__________________X_XX_XX_XX_X
57._RUQ_1686
GG__GG____AACCGGAAGGX_XX_XX_XX_X
58._MITC-000057
GG__GG____AGACAGAAGGX_XX_XX_XX_X
59._SCA_11
CTTT__AG__CTGGTT____X_XX_XX_XX_X

Input profile: SCA_11 GC-08-157-3-56

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_1686

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

53._SCA_11 RUQ_374

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

54._SCA_11

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

55._SCA_11 RUQ_374

81.7 %
41 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

56._SCA_11 RUQ_1686

50 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

57._SCA_11 RUQ_1686

50 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

58._SCA_11 MITC-000057

43 %
79 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

59._SCA_11

40 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240