SNP Profiles of SCA 11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
1._GC-01-117-6-14
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
2._GC-01-117-6-14
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
3._GC-01-117-6-14
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
4._GC-01-117-6-14
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
5._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
6._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
7._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
8._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
9._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
10._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
11._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
12._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
13._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
14._GC-01-117-6-14
ATCCCCCCAGTTTTCCTTAGTT__TTAT
15._GC-08-157-3-56
AT__CCCCAGTTTTCCTTAGTTTTTTAT
16._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
17._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
18._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
19._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
20._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
21._GC-08-157-3-56
ATCCCCCCAGTTTTCCTT__TTTTTTAT
22._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
23._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
24._GC-01-117-6-14
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
25._GC-08-157-3-56
ATCCCCCCAGTTTTCCTTAGTTTTTTAT
26._SCA_11
ATCCCCCC______CCTTAG__TT____
27._SCA_11
ATCCCCCC______CCTTAG__TT____
28._SCA_11
ATCCCCCC______CCTTAG__TT____
29._SCA_11
ATCCCCCC______CCTTAG__TT____
30._SCA_11
ATCCCCCC______CCTTAG__TT____
31._SCA_11
ATCCCCCC______CCTTAG__TT____
32._SCA_11
ATCCCCCC______CCTTAG__TT____
33._SCA_11
ATCCCCCC______CCTTAG__TT____
34._SCA_11
ATCCCCCC______CCTTAG__TT____
35._SCA_11
ATCCCCCC______CCTTAG__TT____
36._SCA_11
ATCCCCCC______CCTTAG__TT____
37._SCA_11
ATCCCCCC______CCTTAG__TT____
38._SCA_11
ATCCCCCC______CCTTAG__TT____
39._SCA_11
ATCCCCCC______CCTTAG__TT____
40._SCA_11
ATCCCCCC______CCTTAG__TT____
41._SCA_11
ATCCCCCC______CCTTAG__TT____
42._SCA_11
ATCCCCCC______CCTTAG__TT____
43._SCA_11
ATCCCCCC______CCTTAG__TT____
44._SCA_11
ATCCCCCC______CCTTAG__TT____
45._SCA_11
ATCCCCCC______CCTTAG__TT____
46._SCA_11
ATCCCCCC______CCTT____TT____
47._SCA_11
ATCCCCCC______CCTTAG__TT____
48._SCA_11
ATCCCCCC______CCTTAG________
49._SCA_11
AT__CCCC______CCTTAG__TT____
50._SCA_11
ATCCCCCC______CCTTAG__TT____
51._SCA_11
ATCCCCCC______CCTTAG__TT____
52._RUQ_1686
______CC__CT________________
53._RUQ_374
AACCCCCC______CCCTAA__TT____
54._SCA_11
AACCCCCC______CCTTAA__TT____
55._RUQ_374
____CCCC__CC__CC____TTTT____
56._RUQ_1686
______AA______CC______CT____
57._RUQ_1686
ATCC__CCAG__AAGG__AGAAAAAAAT
58._MITC-000057
AACC__CCGG__AAGG__AAAAAAAAAA
59._SCA_11
AAAATTCC______CTTTGG__CC____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCCGCCCCAACTGGAAAAGGCC
1._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
2._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
3._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
4._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
5._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
6._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
7._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
8._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
9._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
10._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
11._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
12._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
13._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
14._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
15._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
16._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
17._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
18._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
19._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
20._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGG__
21._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
22._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
23._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
24._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
25._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGG__
26._SCA_11
____GG____CC________AAAA__CC
27._SCA_11
____GG____CC________AAAA__CC
28._SCA_11
____GG____CC________AAAA__CC
29._SCA_11
____GG____CC________AAAA__CC
30._SCA_11
____GG____CC________AAAA__CC
31._SCA_11
____GG____CC________AAAA__CC
32._SCA_11
____GG____CC________AAAA__CC
33._SCA_11
____GG____CC________AAAA__CC
34._SCA_11
____GG____CC________AAAA__CC
35._SCA_11
____GG____CC________AAAA__CC
36._SCA_11
____GG____CC________AAAA__CC
37._SCA_11
____GG____CC________AAAA__CC
38._SCA_11
____GG____CC________AAAA__CC
39._SCA_11
____GG____CC________AAAA__CC
40._SCA_11
____GG____CC________AAAA__CC
41._SCA_11
____GG____CC________AAAA__CC
42._SCA_11
____GG____CC________AAAA__CC
43._SCA_11
____GG____CC________AAAA__CC
44._SCA_11
____GG____CC________AAAA__CC
45._SCA_11
____GG____CC________AAAA__CC
46._SCA_11
____GG____CC________AAAA__CC
47._SCA_11
____GG____CC________AAAA____
48._SCA_11
____GG____CC________AAAA__CC
49._SCA_11
____GG____CC________AAAA__CC
50._SCA_11
____GG____CC________AAAA__CC
51._SCA_11
____GG____CC________AAAA____
52._RUQ_1686
____GGCC__________________CC
53._RUQ_374
____GG____CC________AAAA__CC
54._SCA_11
____GG____CC________AAAA__CC
55._RUQ_374
________GG________GG__AAGGCC
56._RUQ_1686
__GG____GG__CT____GG__ATCCGG
57._RUQ_1686
AAAAGGGG__CCGGAAAGGGAAAACCGG
58._MITC-000057
ACAAGGGG__CCGGAGGGGGAAAA__GG
59._SCA_11
____AA____GG________TTAT__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
1._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
2._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
3._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
4._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
5._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
6._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
7._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
8._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
9._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
10._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
11._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
12._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
13._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
14._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
15._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
16._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
17._GC-08-157-3-56
TTTTTTGGCG__AAGGTTTTAGCCGGCC
18._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCC__CC
19._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
20._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
21._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
22._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
23._GC-08-157-3-56
TTTTTTGGCGCCAAGGTT__AGCCGGCC
24._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
25._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
26._SCA_11
TT______CG__AAGG____AG______
27._SCA_11
TT______CG__AAGG____AG______
28._SCA_11
TT______CG__AAGG____AG______
29._SCA_11
TT______CG__AAGG____AG______
30._SCA_11
TT______CG__AAGG____AG______
31._SCA_11
TT______CG__AAGG____AG______
32._SCA_11
TT______CG__AAGG____AG______
33._SCA_11
TT______CG__AAGG____AG______
34._SCA_11
TT______CG__AAGG____AG______
35._SCA_11
TT______CG__AAGG____AG______
36._SCA_11
TT______CG__AAGG____AG______
37._SCA_11
TT______CG__AAGG____AG______
38._SCA_11
TT______CG__AAGG____AG______
39._SCA_11
TT______CG__AAGG____AG______
40._SCA_11
TT______CG__AAGG____AG______
41._SCA_11
TT______CG__AAGG____AG______
42._SCA_11
TT______CG__AAGG____AG______
43._SCA_11
TT______CG__AAGG____AG______
44._SCA_11
TT______CG__AAGG____AG______
45._SCA_11
TT______CG__AAGG____AG______
46._SCA_11
TT______CG__AAGG____AG______
47._SCA_11
TT______CG__AAGG____AG______
48._SCA_11
TT______CG__AAGG____AG______
49._SCA_11
TT______CG__AAGG____AG______
50._SCA_11
TT______CG__AAGG____AG______
51._SCA_11
TT______CG__AAGG____AG______
52._RUQ_1686
________CG__AA________CC____
53._RUQ_374
TT______CC__AAGG____AG______
54._SCA_11
TT______CC__AAGG____AA______
55._RUQ_374
______AGCCCCAAGG____AACC____
56._RUQ_1686
______GGGG________TT__CC____
57._RUQ_1686
TTAAAAGGCGCCAACCAAAAAGGGGGGG
58._MITC-000057
TTAAAAAGCCCCAACCAAAAAAGGGGGG
59._SCA_11
AA______CC__AATT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAGAACCCCAAAAGGTTTTCC
1._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
2._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
3._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
4._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
5._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
6._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
7._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
8._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
9._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
10._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
11._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
12._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
13._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
14._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
15._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
16._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
17._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
18._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
19._GC-08-157-3-56
GGTTTTGGAG__CCCCAAAAGGTTTTCC
20._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
21._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
22._GC-08-157-3-56
GGTTTTGGAG__CCCCAAAAGGTTTTCC
23._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
24._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGG__TTCC
25._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
26._SCA_11
____TT__________________TTCC
27._SCA_11
____TT__________________TTCC
28._SCA_11
____TT__________________TTCC
29._SCA_11
____TT__________________TTCC
30._SCA_11
____TT__________________TTCC
31._SCA_11
____TT__________________TTCC
32._SCA_11
____TT__________________TTCC
33._SCA_11
____TT__________________TTCC
34._SCA_11
____TT__________________TTCC
35._SCA_11
____TT__________________TTCC
36._SCA_11
____TT__________________TTCC
37._SCA_11
____TT__________________TTCC
38._SCA_11
____TT__________________TTCC
39._SCA_11
____TT__________________TTCC
40._SCA_11
____TT__________________TTCC
41._SCA_11
____TT__________________TTCC
42._SCA_11
____TT__________________TTCC
43._SCA_11
____TT__________________TTCC
44._SCA_11
____TT__________________TTCC
45._SCA_11
____TT__________________TTCC
46._SCA_11
____TT__________________TTCC
47._SCA_11
____TT__________________TTCC
48._SCA_11
____TT__________________TTCC
49._SCA_11
____TT__________________TTCC
50._SCA_11
____TT__________________TTCC
51._SCA_11
____TT__________________TTCC
52._RUQ_1686
________AG__________________
53._RUQ_374
____TT__________________TTCC
54._SCA_11
____TT__________________TTCC
55._RUQ_374
GGTT____AA____________CCTT__
56._RUQ_1686
__TT__AA________________CC__
57._RUQ_1686
CC__AA__AGAAGG__AAAACCAGAAGG
58._MITC-000057
CC__AA__AAAAGG__AAAACCGGAAGG
59._SCA_11
____CC__________________CTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCCTTCCCGGGAAAAGGGGAACT
1._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
2._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
3._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
4._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
5._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
6._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
7._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
8._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
9._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
10._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
11._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
12._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
13._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
14._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
15._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
16._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAA__GGAACT
17._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
18._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
19._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
20._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
21._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
22._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
23._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
24._GC-01-117-6-14
TT__CCCCTTCCCGGGAAAAGGGGAACT
25._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
26._SCA_11
____CC__TTCCCG__AAAAGGGG____
27._SCA_11
____CC__TTCCCG__AAAAGGGG____
28._SCA_11
____CC__TTCCCG__AAAAGGGG____
29._SCA_11
____CC__TTCCCG__AAAAGGGG____
30._SCA_11
____CC__TTCCCG__AAAAGGGG____
31._SCA_11
____CC__TTCCCG__AAAAGGGG____
32._SCA_11
____CC__TTCCCG__AAAAGGGG____
33._SCA_11
____CC__TTCCCG__AAAAGGGG____
34._SCA_11
____CC__TTCCCG__AAAAGGGG____
35._SCA_11
____CC__TTCCCG__AAAAGGGG____
36._SCA_11
____CC__TTCCCG__AAAAGGGG____
37._SCA_11
____CC__TTCCCG__AAAAGGGG____
38._SCA_11
____CC__TTCCCG__AAAAGGGG____
39._SCA_11
____CC__TTCCCG__AAAAGGGG____
40._SCA_11
____CC__TTCCCG__AAAAGGGG____
41._SCA_11
____CC__TTCCCG__AAAAGGGG____
42._SCA_11
____CC__TTCCCG__AAAAGGGG____
43._SCA_11
____CC__TTCCCG__AAAAGGGG____
44._SCA_11
____CC__TTCCCG__AAAAGGGG____
45._SCA_11
____CC__TTCCCG__AAAAGGGG____
46._SCA_11
____CC__TTCCCG__AAAAGGGG____
47._SCA_11
____CC__TTCCCG__AAAAGGGG____
48._SCA_11
____CC__TTCCCG__AAAAGGGG____
49._SCA_11
____CC__TTCCCG__AAAAGGGG____
50._SCA_11
____CC__TTCCCG__AAAA__GG____
51._SCA_11
____CC__TTCCCG__AAAAGGGG____
52._RUQ_1686
__AG____________AAAA__GGAA__
53._RUQ_374
____CG__TTCCCG__ACAGGGGG____
54._SCA_11
____CG__TTCCCG__ACAGGGGG____
55._RUQ_374
TT__CGCCTTCC__GGCCAGGGGGAA__
56._RUQ_1686
____CGCC__AA__GGACAG________
57._RUQ_1686
AAAGGGGGAACCCGGGAAAACCCCAA__
58._MITC-000057
AAAGCGGGAACCCGGGACAGCCCCAA__
59._SCA_11
____CC__CTACGG__CCAATTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTCCGGCCCCAAAACCCCAACCTT
1._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
2._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
3._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
4._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
5._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
6._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
7._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
8._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
9._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
10._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
11._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
12._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
13._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
14._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
15._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
16._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
17._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
18._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
19._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
20._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
21._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
22._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
23._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
24._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
25._GC-08-157-3-56
CCAA__CCGGCCCCAAAACCCCAACCTT
26._SCA_11
__AACT__________AACC______TT
27._SCA_11
__AACT__________AACC______TT
28._SCA_11
__AACT__________AACC______TT
29._SCA_11
__AACT__________AACC______TT
30._SCA_11
__AACT__________AACC______TT
31._SCA_11
__AACT__________AACC______TT
32._SCA_11
__AACT__________AACC______TT
33._SCA_11
__AACT__________AACC______TT
34._SCA_11
__AACT__________AACC______TT
35._SCA_11
__AACT__________AACC______TT
36._SCA_11
__AACT__________AACC______TT
37._SCA_11
__AACT__________AACC______TT
38._SCA_11
__AACT__________AACC______TT
39._SCA_11
__AACT__________AACC______TT
40._SCA_11
__AACT__________AACC______TT
41._SCA_11
__AACT__________AACC______TT
42._SCA_11
__AACT__________AACC______TT
43._SCA_11
__AACT__________AACC______TT
44._SCA_11
__AACT__________AACC______TT
45._SCA_11
__AACT__________AACC______TT
46._SCA_11
__AACT__________AACC______TT
47._SCA_11
__AACT__________AACC______TT
48._SCA_11
__AACT__________AACC______TT
49._SCA_11
__AACT__________AACC______TT
50._SCA_11
__AACT__________AACC______TT
51._SCA_11
__AA____________AACC______TT
52._RUQ_1686
__AG____________AACC____CC__
53._RUQ_374
__GGCC__________AACC______TT
54._SCA_11
__GGCC__________AACC______TT
55._RUQ_374
________________AACC____CCTT
56._RUQ_1686
CG________________GG________
57._RUQ_1686
____AGCCGGCCCC__AAGGGGAACCAA
58._MITC-000057
____GGCCGGCCCC__AAGGGGAACCAA
59._SCA_11
__AATT__________CCGG______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
1._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
2._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
3._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
4._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
5._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
6._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
7._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
8._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
9._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
10._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
11._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
12._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
13._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
14._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
15._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
16._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
17._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
18._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
19._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
20._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
21._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
22._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
23._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
24._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
25._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
26._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
27._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
28._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
29._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
30._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
31._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
32._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
33._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
34._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
35._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
36._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
37._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
38._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
39._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
40._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
41._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
42._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
43._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
44._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
45._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
46._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
47._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
48._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
49._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
50._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
51._SCA_11
CCCC__GG__TTGGCC____X_XX_XX_XX_X
52._RUQ_1686
__CC____CC__GG______X_XX_XX_XX_X
53._RUQ_374
CCCC__GG__CTGTCT____X_XX_XX_XX_X
54._SCA_11
CCCC__GG__CTGTCT____X_XX_XX_XX_X
55._RUQ_374
______GGCCCTGT______X_XX_XX_XX_X
56._RUQ_1686
CT__________________X_XX_XX_XX_X
57._RUQ_1686
GG__GG____AACCGGAAGGX_XX_XX_XX_X
58._MITC-000057
GG__GG____AGACAGAAGGX_XX_XX_XX_X
59._SCA_11
CTTT__AG__CTGGTT____X_XX_XX_XX_X

Input profile: SCA_11 GC-08-157-3-56

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_1686

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

53._SCA_11 RUQ_374

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

54._SCA_11

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

55._SCA_11 RUQ_374

82.1 %
42 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

56._SCA_11 RUQ_1686

50 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

57._SCA_11 RUQ_1686

50 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

58._SCA_11 MITC-000057

43.7 %
79 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

59._SCA_11

40 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240