SNP Profiles of GU-133C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCCCCCCGGTTCCTTAACC
1._GC-01-116-6-13
AACCACGGGGCCCCCCGGTTCCTTAACC
2._GC-01-116-6-13
AACCACGGGGCCCCCCGGTTCCTTAACC
3._GC-01-116-6-13
AACCACGGGGCCCCCCGGTTCCTTAACC
4._GC-08-164-4-07
AACCACGGGGCCCCCCGGTTCCTTAACC
5._GC-08-164-4-07
AACCACGGGGCCCCCCGGTTCCTTAACC
6._GC-01-116-6-13
AACCACGGGGCCCCCCGGTTCCTTAACC
7._GC-08-164-4-07
AACCACGGGGCCCCCCGGTTCCTTAACC
8._GC-08-164-4-07
AA__ACGGGGCCCCCCGGTTCCTTAACC
9._GC-08-164-4-07
AACCACGGGGCCCCCCGGTTCCTTAACC
10._GC-01-116-6-13
AACCACGGGGCCCCCCGGTT__TTAACC
11._RUQ_190
__CCAC______CC____TTCC______
12._GU_133_/C
AACCAC______CCCCGG__CC______
13._GU_133_/C
AACCAC______CCCCGG__CC______
14._GU_133_/C
AACCAC______CCCCGG__CC______
15._GU_133_/C
AACCAC______CCCCGG__CC______
16._GU_133_/C
AACCAC______CCCCGG__CC______
17._GU_133_/C
AACCAC______CCCCGG__CC______
18._GU_133_/C
AACCAC______CCCCGG__CC______
19._GU_133_/C
AACCAC______CCCCGG__CC______
20._GU_133_/C
AA__AC______CCCCGG__CC______
21._GU_133_/C
AACCAC______CCCCGG__CC______
22._GU_133_/C
AACCAC______CCCCGG__________
23._RUQ_190
AACCAC______CCCCGG__CC______
24._RUQ_190
____AC______________________
25._RUQ_190
____AC______CC______CC______
26._GC-01-116-6-13
AA__ACGGGGGGGG__GGAAGGAATTCC
27._MITC-000670
AA__ACGGGGGGGG__GGAAGGAATTCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGCCGGTTAATTGGATAACCGGAATT
1._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
2._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
3._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
4._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
5._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
6._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
7._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
8._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
9._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
10._GC-01-116-6-13
GGGGCCGG__AATTGGATAACCGGAATT
11._RUQ_190
____CC________GG__AACCGG____
12._GU_133_/C
GG____GG________ATAA__GGAA__
13._GU_133_/C
GG____GG________ATAA__GGAA__
14._GU_133_/C
GG____GG________ATAA__GGAA__
15._GU_133_/C
GG____GG________ATAA__GGAA__
16._GU_133_/C
GG____GG________ATAA__GGAA__
17._GU_133_/C
GG____GG________ATAA__GGAA__
18._GU_133_/C
GG____GG________ATAA__GGAA__
19._GU_133_/C
GG____GG________ATAA__GGAA__
20._GU_133_/C
GG____GG________ATAA__GGAA__
21._GU_133_/C
GG____GG________ATAA__GGAA__
22._GU_133_/C
GG____GG________ATAA__GGAA__
23._RUQ_190
GG____GG________ATAA__GGAA__
24._RUQ_190
GGCC__________________GG____
25._RUQ_190
____GG__TT____GG__AACCCC____
26._GC-01-116-6-13
GGCC__GGAAGGAAGGATAAGGCCAAAA
27._MITC-000670
GGCC__GGAAGGAAGGATAAGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
1._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
2._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
3._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
4._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
5._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
6._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
7._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
8._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
9._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
10._GC-01-116-6-13
TTGGCCCCGGTT____GGCCGGCCGGTT
11._RUQ_190
__GGCCCCGGTT____GGCC____GGTT
12._GU_133_/C
____CC__GGTT____GG__________
13._GU_133_/C
____CC__GGTT____GG__________
14._GU_133_/C
____CC__GGTT____GG__________
15._GU_133_/C
____CC__GGTT____GG__________
16._GU_133_/C
____CC__GGTT____GG__________
17._GU_133_/C
____CC__GGTT____GG__________
18._GU_133_/C
____CC__GGTT____GG__________
19._GU_133_/C
____CC__GGTT____GG__________
20._GU_133_/C
____CC__GGTT____GG__________
21._GU_133_/C
____CC__GGTT____GG__________
22._GU_133_/C
____CC__GGTT____GG__________
23._RUQ_190
____CC__GGGT____GG__________
24._RUQ_190
____CC__GG________CC________
25._RUQ_190
__GGCC________GG__CC______TT
26._GC-01-116-6-13
AAGGCCCCGGAA__CCGGGGGGGGCC__
27._MITC-000670
AAGGCCCCGGAACCCCGGGGGGGGCC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GC-01-116-6-13
TTAAGGAACCCC__GGTTTTTTCCTTGG
11._RUQ_190
____GG____________TTTT__TT__
12._GU_133_/C
TT__________________TTCC____
13._GU_133_/C
TT__________________TTCC____
14._GU_133_/C
TT__________________TTCC____
15._GU_133_/C
TT__________________TTCC____
16._GU_133_/C
TT__________________TTCC____
17._GU_133_/C
TT__________________TTCC____
18._GU_133_/C
TT__________________TTCC____
19._GU_133_/C
TT__________________TTCC____
20._GU_133_/C
TT__________________TTCC____
21._GU_133_/C
TT__________________TTCC____
22._GU_133_/C
TT__________________TTCC____
23._RUQ_190
TT__________________TTCC____
24._RUQ_190
____GG____________________GG
25._RUQ_190
__AA________________TT______
26._GC-01-116-6-13
AA__GGAAGG__GGGGAAAAAAGGAAGG
27._MITC-000670
AA__GGAAGG__GGGGAAAAAAGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCGG
1._GC-01-116-6-13
CCCCCCAAGGGGAAGGGGGGAACCCCGG
2._GC-01-116-6-13
CCCCCCAAGGGGAAGGGGGGAACCCCGG
3._GC-01-116-6-13
CCCCCCAAGGGGAAGGGGGGAACCCCGG
4._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
5._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
6._GC-01-116-6-13
CCCCCCAAGGGGAA__GGGGAACCCCGG
7._GC-08-164-4-07
CCCCCC__GGGGAAGGGGGGAACCCCGG
8._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
9._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
10._GC-01-116-6-13
CCCCCCAAGGGGAA__GGGGAACCCCGG
11._RUQ_190
CCCCCCAA__GGAAGGGGGGAA______
12._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
13._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
14._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
15._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
16._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
17._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
18._GU_133_/C
CC__CCAAGG__AA__GGGG______GG
19._GU_133_/C
CC__CC__GG__AAGGGGGG______GG
20._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
21._GU_133_/C
CC__CCAAGG__AAGGGGGG______GG
22._GU_133_/C
CC__CCAAGG__AA__GGGG______GG
23._RUQ_190
CC__CCAAGG__AAGGGGGG______AA
24._RUQ_190
____________AAGG__GGAA____AA
25._RUQ_190
GGCC__AA__GGAAGG________CC__
26._GC-01-116-6-13
GGGGGGAAGGGGAAGGCCCCAA______
27._MITC-000670
GGGGGGAAGGGGAAGGCCCCAA______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCACGGCCCCGGAACGCCTTAACCCCCC
1._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
2._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
3._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
4._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
5._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
6._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
7._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
8._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
9._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
10._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
11._RUQ_190
____________AACG____AACC____
12._GU_133_/C
CC__________AACG______CCCCCC
13._GU_133_/C
CC__________AACG______CCCCCC
14._GU_133_/C
CC__________AACG______CCCCCC
15._GU_133_/C
CC__________AACG______CCCCCC
16._GU_133_/C
CC__________AACG______CCCCCC
17._GU_133_/C
CC__________AACG______CCCCCC
18._GU_133_/C
CC__________AACG______CCCCCC
19._GU_133_/C
CC__________AACG______CCCCCC
20._GU_133_/C
CC__________AACG______CCCCCC
21._GU_133_/C
CC__________AACG______CCCCCC
22._GU_133_/C
CC__________AACG______CCCCCC
23._RUQ_190
CC__________AACG______CCCCCC
24._RUQ_190
____________AACG____AA____CC
25._RUQ_190
______________CG________CC__
26._GC-01-116-6-13
GGACGGCCCC__AACGGGTTAAGGGG__
27._MITC-000670
GGACGGCCCC__AACGGGTTAAGGGG__
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-08-164-4-07
CCGGCCCC__TTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-116-6-13
CCGGCCCC____AAGGX_XX_XX_XX_XX_XX_X
11._RUQ_190
__GGCCCCTT______X_XX_XX_XX_XX_XX_X
12._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
13._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
14._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
18._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
19._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
20._GU_133_/C
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
21._GU_133_/C
__GG__CC__TT____X_XX_XX_XX_XX_XX_X
22._GU_133_/C
__GG__CC________X_XX_XX_XX_XX_XX_X
23._RUQ_190
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
24._RUQ_190
____CC__TT______X_XX_XX_XX_XX_XX_X
25._RUQ_190
________________X_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X
27._MITC-000670
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C GC-08-164-4-07

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-08-164-4-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._GU_133_/C GC-01-116-6-13

identical
84 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

11._GU_133_/C RUQ_190

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_133_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

14._GU_133_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

16._GU_133_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

17._GU_133_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

19._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

20._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

21._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

25._GU_133_/C RUQ_190

88 %
25 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

48.1 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240