SNP Profiles of SCA-3   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCCTTAATTTTTT
1._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
2._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
3._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
4._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
5._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
6._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
7._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
8._GC-08-169-4-12
ATCCCCCC__AATTTTCCTTAATTTTTT
9._SCA_3
ATCCCCCC________CCTTAA__TT__
10._SCA_3
ATCCCCCC________CCTTAA__TT__
11._SCA_3
ATCCCCCC________CCTTAA__TT__
12._SCA_3
ATCCCCCC________CCTTAA__TT__
13._SCA_3
ATCCCCCC________CCTTAA__TT__
14._SCA_3
ATCCCCCC________CCTTAA__TT__
15._SCA_3
ATCCCCCC________CCTTAA__TT__
16._SCA_3
ATCCCCCC________CCTTAA__TT__
17._SCA_3
ATCCCCCC________CCTTAA__TT__
18._SCA_3
ATCCCCCC________CCTTAA__TT__
19._GC-01-123-6-20
ATCC__CCAGAA__AAGG__AAAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTACAAGGCCGGCCCCAACCGGAAAAGG
1._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
2._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
3._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
4._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
5._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
6._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
7._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
8._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
9._SCA_3
______GG____CC________AAAA__
10._SCA_3
______GG____CC________AAAA__
11._SCA_3
______GG____CC________AAAA__
12._SCA_3
______GG____CC________AAAA__
13._SCA_3
______GG____CC________AAAA__
14._SCA_3
______GG____CC________AAAA__
15._SCA_3
______GG____CC________AAAA__
16._SCA_3
______GG____CC________AAAA__
17._SCA_3
______GG____CC________AAAA__
18._SCA_3
______GG____CC________AAAA__
19._GC-01-123-6-20
AAACAAGGGG__CCGGAAGGGGAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTCCCCAAGGTTTTAACCGGCC
1._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
2._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
3._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
4._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
5._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
6._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
7._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
8._GC-08-169-4-12
CCTTTTTTCCCCAAGGTTTTAACCGGCC
9._SCA_3
CCTT____CC__AAGG____AA______
10._SCA_3
CCTT____CC__AAGG____AA______
11._SCA_3
CCTT____CC__AAGG____AA______
12._SCA_3
CCTT____CC__AAGG____AA______
13._SCA_3
CCTT____CC__AAGG____AA______
14._SCA_3
CCTT____CC__AAGG____AA______
15._SCA_3
CCTT____CC__AAGG____AA______
16._SCA_3
CCTT____CC__AAGG____AA______
17._SCA_3
CCTT____CC__AAGG____AA______
18._SCA_3
CCTT____CC__AAGG____AA______
19._GC-01-123-6-20
GGTTAAAACCCCAACCAAAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCAAAAAAGGTTCCTT
1._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
2._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
3._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
4._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
5._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
6._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
7._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCC__
8._GC-08-169-4-12
GGTTTTGGAAAACCAAAAAAGGTTCCTT
9._SCA_3
____TT________________TTCC__
10._SCA_3
____TT________________TTCC__
11._SCA_3
____TT________________TTCC__
12._SCA_3
____TT________________TTCC__
13._SCA_3
____TT________________TTCC__
14._SCA_3
____TT________________TTCC__
15._SCA_3
____TT________________TTCC__
16._SCA_3
____TT________________TTCC__
17._SCA_3
____TT________________TTCC__
18._SCA_3
____TT________________TTCC__
19._GC-01-123-6-20
CC__AA__AAAAGG__AAAACCAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCCCTCCCGGGACAAGGGGAACCCC
1._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
2._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
3._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
4._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
5._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
6._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
7._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
8._GC-08-169-4-12
AGCGCCCTCCCGGGACAAGGGGAACCCC
9._SCA_3
__CG__CTCCCG__ACAAGGGG______
10._SCA_3
__CG__CTCCCG__ACAAGGGG______
11._SCA_3
__CG__CTCCCG__ACAAGGGG______
12._SCA_3
__CG__CTCCCG__ACAAGGGG______
13._SCA_3
__CG__CTCCCG__ACAAGGGG______
14._SCA_3
__CG__CTCCCG__ACAAGGGG______
15._SCA_3
__CG__CTCCCG__ACAAGGGG______
16._SCA_3
__CG__CTCCCG__ACAAGGGG______
17._SCA_3
__CG__CTCCCG__ACAAGGGG______
18._SCA_3
______CTCCCG__ACAAGGGG______
19._GC-01-123-6-20
AGCGGGAGCCCGGGACAACCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTCCGGCCCCAAAACCCCAACCTTCC
1._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
2._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
3._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
4._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
5._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
6._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
7._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
8._GC-08-169-4-12
AACTCCGGCCCCAAAACCCCAACCTTCC
9._SCA_3
AACT__________AACC______TTCC
10._SCA_3
AACT__________AACC______TTCC
11._SCA_3
AACT__________AACC______TTCC
12._SCA_3
AACT__________AACC______TTCC
13._SCA_3
AACT__________AACC______TTCC
14._SCA_3
AACT__________AACC______TTCC
15._SCA_3
AACT__________AACC______TTCC
16._SCA_3
AACT__________AACC______TTCC
17._SCA_3
AACT__________AACC______TTCC
18._SCA_3
GGCT__________AACC______TTCC
19._GC-01-123-6-20
__AGCCGGCCCC__AAGGGGAACCAAGG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
1._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
2._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
3._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
4._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
5._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
6._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
7._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
8._GC-08-169-4-12
CCCCGGCCCTGTCCTTAGX_XX_XX_XX_XX_X
9._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
10._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
11._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
12._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
13._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
14._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
15._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
16._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
17._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
18._SCA_3
CC__GG__CTGTCC____X_XX_XX_XX_XX_X
19._GC-01-123-6-20
__GG____AGACGGAAAGX_XX_XX_XX_XX_X

Input profile: SCA_3 GC-08-169-4-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._SCA_3 GC-08-169-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._SCA_3 GC-08-169-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 10
 Dapeng Zhang, 2016

10._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 3 > FP
 Dapeng Zhang, 2016

11._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 2 > FP
 Dapeng Zhang, 2016

12._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 1 > FP
 Dapeng Zhang, 2016

13._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 11
 Dapeng Zhang, 2016

14._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 9
 Dapeng Zhang, 2016

15._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 7
 Dapeng Zhang, 2016

16._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 5
 Dapeng Zhang, 2016

17._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 4
 Dapeng Zhang, 2016

18._SCA_3

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A26 T8
 Dapeng Zhang, 2016

19._SCA_3 GC-01-123-6-20

50.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240