SNP Profiles of SCA-3   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCCTTAATTTTTT
1._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
2._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
3._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
4._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
5._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
6._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
7._GC-08-169-4-12
ATCCCCCCAGAATTTTCCTTAATTTTTT
8._GC-08-169-4-12
ATCCCCCC__AATTTTCCTTAATTTTTT
9._SCA_3
ATCCCCCC________CCTTAA__TT__
10._SCA_3
ATCCCCCC________CCTTAA__TT__
11._SCA_3
ATCCCCCC________CCTTAA__TT__
12._SCA_3
ATCCCCCC________CCTTAA__TT__
13._SCA_3
ATCCCCCC________CCTTAA__TT__
14._SCA_3
ATCCCCCC________CCTTAA__TT__
15._SCA_3
ATCCCCCC________CCTTAA__TT__
16._SCA_3
ATCCCCCC________CCTTAA__TT__
17._SCA_3
ATCCCCCC________CCTTAA__TT__
18._SCA_3
ATCCCCCC________CCTTAA__TT__
19._GC-01-123-6-20
ATCC__CCAGAA__AAGG__AAAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTACAAGGCCGGCCCCAACCGGAAAAGG
1._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
2._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
3._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
4._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
5._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
6._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
7._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
8._GC-08-169-4-12
TTACAAGGCCGGCCCCAACCGGAAAAGG
9._SCA_3
______GG____CC________AAAA__
10._SCA_3
______GG____CC________AAAA__
11._SCA_3
______GG____CC________AAAA__
12._SCA_3
______GG____CC________AAAA__
13._SCA_3
______GG____CC________AAAA__
14._SCA_3
______GG____CC________AAAA__
15._SCA_3
______GG____CC________AAAA__
16._SCA_3
______GG____CC________AAAA__
17._SCA_3
______GG____CC________AAAA__
18._SCA_3
______GG____CC________AAAA__
19._GC-01-123-6-20
AAACAAGGGG__CCGGAAGGGGAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCCCCAAGGTTTTAACCGG
1._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
2._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
3._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
4._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
5._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
6._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
7._GC-08-169-4-12
CCTTTTTT__CCCCAAGGTTTTAACCGG
8._GC-08-169-4-12
CCTTTTTTGGCCCCAAGGTTTTAACCGG
9._SCA_3
CCTT______CC__AAGG____AA____
10._SCA_3
CCTT______CC__AAGG____AA____
11._SCA_3
CCTT______CC__AAGG____AA____
12._SCA_3
CCTT______CC__AAGG____AA____
13._SCA_3
CCTT______CC__AAGG____AA____
14._SCA_3
CCTT______CC__AAGG____AA____
15._SCA_3
CCTT______CC__AAGG____AA____
16._SCA_3
CCTT______CC__AAGG____AA____
17._SCA_3
CCTT______CC__AAGG____AA____
18._SCA_3
CCTT______CC__AAGG____AA____
19._GC-01-123-6-20
GGTTAAAAGGCCCCAACCAAAAAAGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAAAACCAAAAAAGGTTCC
1._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
2._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
3._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
4._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
5._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
6._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
7._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
8._GC-08-169-4-12
CCGGTTTTGGAAAACCAAAAAAGGTTCC
9._SCA_3
______TT________________TTCC
10._SCA_3
______TT________________TTCC
11._SCA_3
______TT________________TTCC
12._SCA_3
______TT________________TTCC
13._SCA_3
______TT________________TTCC
14._SCA_3
______TT________________TTCC
15._SCA_3
______TT________________TTCC
16._SCA_3
______TT________________TTCC
17._SCA_3
______TT________________TTCC
18._SCA_3
______TT________________TTCC
19._GC-01-123-6-20
GGCC__AA__AAAAGG__AAAACCAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCGCCCTCCCGGGACAAGGGGAACC
1._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
2._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
3._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
4._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
5._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
6._GC-08-169-4-12
__AGCGCCCTCCCGGGACAAGGGGAACC
7._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
8._GC-08-169-4-12
TTAGCGCCCTCCCGGGACAAGGGGAACC
9._SCA_3
____CG__CTCCCG__ACAAGGGG____
10._SCA_3
____CG__CTCCCG__ACAAGGGG____
11._SCA_3
____CG__CTCCCG__ACAAGGGG____
12._SCA_3
____CG__CTCCCG__ACAAGGGG____
13._SCA_3
____CG__CTCCCG__ACAAGGGG____
14._SCA_3
____CG__CTCCCG__ACAAGGGG____
15._SCA_3
____CG__CTCCCG__ACAAGGGG____
16._SCA_3
____CG__CTCCCG__ACAAGGGG____
17._SCA_3
____CG__CTCCCG__ACAAGGGG____
18._SCA_3
________CTCCCG__ACAAGGGG____
19._GC-01-123-6-20
AAAGCGGGAGCCCGGGACAACCCCAA__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTCCGGCCCCAAAACCCCAACCTT
1._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
2._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
3._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
4._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
5._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
6._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
7._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
8._GC-08-169-4-12
CCAACTCCGGCCCCAAAACCCCAACCTT
9._SCA_3
__AACT__________AACC______TT
10._SCA_3
__AACT__________AACC______TT
11._SCA_3
__AACT__________AACC______TT
12._SCA_3
__AACT__________AACC______TT
13._SCA_3
__AACT__________AACC______TT
14._SCA_3
__AACT__________AACC______TT
15._SCA_3
__AACT__________AACC______TT
16._SCA_3
__AACT__________AACC______TT
17._SCA_3
__AACT__________AACC______TT
18._SCA_3
__GGCT__________AACC______TT
19._GC-01-123-6-20
____AGCCGGCCCC__AAGGGGAACCAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
1._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
2._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
3._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
4._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
5._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
6._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
7._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
8._GC-08-169-4-12
CCCCCCGGCCCTGTCCTTAGX_XX_XX_XX_X
9._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
10._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
11._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
12._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
13._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
14._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
15._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
16._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
17._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
18._SCA_3
CCCC__GG__CTGTCC____X_XX_XX_XX_X
19._GC-01-123-6-20
GG__GG____AGACGGAAAGX_XX_XX_XX_X

Input profile: SCA_3 GC-08-169-4-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._SCA_3 GC-08-169-4-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._SCA_3 GC-08-169-4-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._SCA_3 GC-08-169-4-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._SCA_3 GC-08-169-4-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._SCA_3 GC-08-169-4-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._SCA_3 GC-08-169-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 10
 Dapeng Zhang, 2016

10._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 3 > FP
 Dapeng Zhang, 2016

11._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 2 > FP
 Dapeng Zhang, 2016

12._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 1 > FP
 Dapeng Zhang, 2016

13._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 11
 Dapeng Zhang, 2016

14._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 9
 Dapeng Zhang, 2016

15._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 7
 Dapeng Zhang, 2016

16._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 5
 Dapeng Zhang, 2016

17._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 4
 Dapeng Zhang, 2016

18._SCA_3

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A26 T8
 Dapeng Zhang, 2016

19._SCA_3 GC-01-123-6-20

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240