SNP Profiles of UCAYALI-12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCCCAAAATTTTCCTTAGTTTTTT
1._GC-08-185-4-28
AACCCCCCAAAATTTTCCTTAGTTTTTT
2._GC-08-185-4-28
AACCCCCCAAAATTTTCCTTAGTTTTTT
3._GC-08-185-4-28
AACCCCCCAAAATTTTCCTTAGTTTTTT
4._GC-08-185-4-28
AACCCCCCAAAATTTTCCTTAGTTTTTT
5._GC-08-184-4-27
AACCCCCCAAAATTTTCCTTAGTTTTTT
6._GC-08-184-4-27
AACCCCCCAAAATTTTCCTTAGTTTTTT
7._GC-08-184-4-27
AACCCCCCAAAATTTTCCTTAGTTTTTT
8._GC-08-185-4-28
__CCCCCCAAAATTTTCCTTAGTTTTTT
9._GC-08-184-4-27
AACCCCCCAAAATTTTCCTTAGTTTTTT
10._U_12_[PER]
AACCCCCC________CCTTAG__TT__
11._U_12_[PER]
AACCCCCC________CCTTAG__TT__
12._U_12_[PER]
AACCCCCC________CCTTAG__TT__
13._U_12_[PER]
AACCCCCC________CCTTAG__TT__
14._U_12_[PER]
AACCCCCC________CCTTAG__TT__
15._U_12_[PER]
AACCCCCC________CCTTAG__TT__
16._U_12_[PER]
AACCCCCC________CCTTAG__TT__
17._U_12_[PER]
AACCCCCC________CCTTAG__TT__
18._U_12_[PER]
__CCCCCC________CCTTAG__TT__
19._U_12_[PER]
AACCCCCC________CCTTAG__TT__
20._U_12_[PER]
__CCCCCC________CCTTAG__TT__
21._U_12_[PER]
ATCCCTAC________CTCTAA__CT__
22._GC-02-4-1-4
AACC__CCAAAA__AAGG__AGAAAAAA
23._U_12_Fld#_179_Plt#_5
ATCC__ACAGAG__AGAG__AAAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTCCAAGGCCCCCCCCAACCGGAAAAGG
1._GC-08-185-4-28
TTCCAAGGCCCCCCCCAACCGGAAAAGG
2._GC-08-185-4-28
TTCCAAGGCCCCCCCCAACCGGAAAAGG
3._GC-08-185-4-28
TTCCAAGGCCCCCCCCAACCGGAAAAGG
4._GC-08-185-4-28
TTCCAAGGCCCCCCCCAACCGGAAAAGG
5._GC-08-184-4-27
TTCCAAGGCCCCCCCCAACCGGAAAAGG
6._GC-08-184-4-27
TTCCAAGGCCCCCCCCAACCGGAAAAGG
7._GC-08-184-4-27
TTCCAAGGCCCCCCCCAACCGGAAAAGG
8._GC-08-185-4-28
TTCCAAGGCCCCCCCCAACCGGAAAAGG
9._GC-08-184-4-27
TTCCAAGGCCCCCCCCAACCGGAAAAGG
10._U_12_[PER]
______GG____CC________AAAA__
11._U_12_[PER]
______GG____CC________AAAA__
12._U_12_[PER]
______GG____CC________AAAA__
13._U_12_[PER]
______GG____CC________AAAA__
14._U_12_[PER]
______GG____CC________AAAA__
15._U_12_[PER]
______GG____CC________AAAA__
16._U_12_[PER]
______GG____CC________AAAA__
17._U_12_[PER]
______GG____CC________AAAA__
18._U_12_[PER]
______GG____CC________AAAA__
19._U_12_[PER]
______GG____CC________AAAA__
20._U_12_[PER]
______GG____CC________AAAA__
21._U_12_[PER]
______GG____CG________ATAT__
22._GC-02-4-1-4
AACCAAGGGG__CCGGAAGGGGAAAACC
23._U_12_Fld#_179_Plt#_5
ATAAAGGGCG__CGGGAAAAGGATATGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
1._GC-08-185-4-28
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
2._GC-08-185-4-28
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
3._GC-08-185-4-28
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
4._GC-08-185-4-28
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
5._GC-08-184-4-27
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
6._GC-08-184-4-27
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
7._GC-08-184-4-27
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
8._GC-08-185-4-28
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
9._GC-08-184-4-27
CCTTTTTTGGCGCCAAGGTTTTGGCCGG
10._U_12_[PER]
CCTT______CG__AAGG____GG____
11._U_12_[PER]
CCTT______CG__AAGG____GG____
12._U_12_[PER]
CCTT______CG__AAGG____GG____
13._U_12_[PER]
CCTT______CG__AAGG____GG____
14._U_12_[PER]
CCTT______CG__AAGG____GG____
15._U_12_[PER]
CCTT______CG__AAGG____GG____
16._U_12_[PER]
CCTT______CG__AAGG____GG____
17._U_12_[PER]
CCTT______CG__AAGG____GG____
18._U_12_[PER]
CCTT______CG__AAGG____GG____
19._U_12_[PER]
CCTT______CG__AAGG____GG____
20._U_12_[PER]
CCTT______CG__AAGG____GG____
21._U_12_[PER]
CGAT______GG__AGGT____AG____
22._GC-02-4-1-4
GGTTAAAAGGCGCCAACCAAAAGGGGGG
23._U_12_Fld#_179_Plt#_5
CGATAAACGGGGACAGACACAAAAGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAAAACCCCGGAGGGTTCC
1._GC-08-185-4-28
CCGGTTTTGGAAAACCCCGGAGGGTTCC
2._GC-08-185-4-28
CCGGTTTTGGAAAACCCCGGAGGGTTCC
3._GC-08-185-4-28
CCGGTTTTGGAAAACCCCGGAGGGTTCC
4._GC-08-185-4-28
CCGGTTTTGGAAAACCCCGGAGGGTTCC
5._GC-08-184-4-27
CCGGTTTTGGAAAACCCCGGAGGGTTCC
6._GC-08-184-4-27
CCGGTTTTGGAAAACCCCGGAGGGTTCC
7._GC-08-184-4-27
CCGGTTTTGGAAAACCCCGGAGGGTTCC
8._GC-08-185-4-28
CCGGTTTTGGAAAACCCCGGAGGGTTCC
9._GC-08-184-4-27
CCGGTTTTGGAAAACCCCGGAGGGTTCC
10._U_12_[PER]
______TT________________TTCC
11._U_12_[PER]
______TT________________TTCC
12._U_12_[PER]
______TT________________TTCC
13._U_12_[PER]
______TT________________TTCC
14._U_12_[PER]
______TT________________TTCC
15._U_12_[PER]
______TT________________TTCC
16._U_12_[PER]
______TT________________TTCC
17._U_12_[PER]
______TT________________TTCC
18._U_12_[PER]
______TT________________TTCC
19._U_12_[PER]
______TT________________TTCC
20._U_12_[PER]
______TT________________TTCC
21._U_12_[PER]
______CT________________CTCC
22._GC-02-4-1-4
GGCC__AA__AAAAGG__GGAGCCAAGG
23._U_12_Fld#_179_Plt#_5
GGCC__AG__AAAAGG__AGAAACAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTCCGGGGACAAGGGGAACC
1._GC-08-185-4-28
TTGGCCCCTTCCGGGGACAAGGGGAACC
2._GC-08-185-4-28
TTGGCCCCTTCCGGGGACAAGGGGAACC
3._GC-08-185-4-28
TTGGCCCCTTCCGGGGACAAGGGGAACC
4._GC-08-185-4-28
TTGGCCCCTTCCGGGGACAAGGGGAACC
5._GC-08-184-4-27
TTGGCCCCTTCCGGGGACAAGGGGAACC
6._GC-08-184-4-27
TTGGCCCCTTCCGGGGACAAGGGGAACC
7._GC-08-184-4-27
TTGGCCCCTTCCGGGGACAAGGGGAACC
8._GC-08-185-4-28
TTGGCCCCTTCCGGGGACAAGGGGAACC
9._GC-08-184-4-27
TTGGCCCCTTCCGGGGACAAGGGGAACC
10._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
11._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
12._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
13._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
14._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
15._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
16._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
17._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
18._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
19._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
20._U_12_[PER]
____CC__TTCCGG__ACAAGGGG____
21._U_12_[PER]
____CC__TTCCCG__CCAGGTGT____
22._GC-02-4-1-4
AAGGGGGGAACCGGGGACAACCCCAA__
23._U_12_Fld#_179_Plt#_5
AAGGGGGGAACCCGGGCCAGACACGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTCCGGCCCCAAACCCCCAACCTT
1._GC-08-185-4-28
CCAACTCCGGCCCCAAACCCCCAACCTT
2._GC-08-185-4-28
CCAACTCCGGCCCCAAACCCCCAACCTT
3._GC-08-185-4-28
CCAACTCCGGCCCCAAACCCCCAACCTT
4._GC-08-185-4-28
CCAACTCCGGCCCCAAACCCCCAACCTT
5._GC-08-184-4-27
CCAACTCCGGCCCCAAACCCCCAACCTT
6._GC-08-184-4-27
CCAACTCCGGCCCCAAACCCCCAACCTT
7._GC-08-184-4-27
CCAACTCCGGCCCCAAACCCCCAACCTT
8._GC-08-185-4-28
CCAACTCCGGCCCCAAACCCCCAACCTT
9._GC-08-184-4-27
CCAACTCCGGCCCC__ACCCCCAACCTT
10._U_12_[PER]
__AACT__________ACCC______TT
11._U_12_[PER]
__AACT__________ACCC______TT
12._U_12_[PER]
__AACT__________ACCC______TT
13._U_12_[PER]
__AACT__________ACCC______TT
14._U_12_[PER]
__AACT__________ACCC______TT
15._U_12_[PER]
__AACT__________ACCC______TT
16._U_12_[PER]
__AACT__________ACCC______TT
17._U_12_[PER]
__AACT__________ACCC______TT
18._U_12_[PER]
__AACT__________ACCC______TT
19._U_12_[PER]
__AACT__________ACCC______TT
20._U_12_[PER]
__AACT__________ACCC______TT
21._U_12_[PER]
__AACC__________ACCG______CT
22._GC-02-4-1-4
____AGCCGGCCCC__ACGGGGAACCAA
23._U_12_Fld#_179_Plt#_5
____GGACAGACCC__ACCGGGATCCAG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
1._GC-08-185-4-28
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
2._GC-08-185-4-28
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
3._GC-08-185-4-28
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
4._GC-08-185-4-28
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
5._GC-08-184-4-27
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
6._GC-08-184-4-27
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
7._GC-08-184-4-27
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
8._GC-08-185-4-28
CCCCCCGGCCCTTTCCTTGGX_XX_XX_XX_X
9._GC-08-184-4-27
CCCCCCGGCCCT__CCTTGGX_XX_XX_XX_X
10._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
11._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
12._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
13._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
14._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
15._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
16._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
17._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
18._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
19._U_12_[PER]
CCCC__GG__CT__CC____X_XX_XX_XX_X
20._U_12_[PER]
CCCC__GG__CTTTCC____X_XX_XX_XX_X
21._U_12_[PER]
CTCC__AG__TTGTCT____X_XX_XX_XX_X
22._GC-02-4-1-4
GG__GG____AGAAGGAAGGX_XX_XX_XX_X
23._U_12_Fld#_179_Plt#_5
AG__AG____AGACAGAAGGX_XX_XX_XX_X

Input profile: U_12_[PER] GC-08-184-4-27

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._U_12_[PER] GC-08-185-4-28

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._U_12_[PER] GC-08-185-4-28

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._U_12_[PER] GC-08-185-4-28

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._U_12_[PER] GC-08-185-4-28

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._U_12_[PER] GC-08-184-4-27

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._U_12_[PER] GC-08-184-4-27

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._U_12_[PER] GC-08-184-4-27

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._U_12_[PER] GC-08-185-4-28

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._U_12_[PER] GC-08-184-4-27

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 5
 Dapeng Zhang, 2016

11._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 4
 Dapeng Zhang, 2016

12._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 3
 Dapeng Zhang, 2016

13._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 2
 Dapeng Zhang, 2016

14._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 7
 Dapeng Zhang, 2016

15._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 5
 Dapeng Zhang, 2016

16._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 2
 Dapeng Zhang, 2016

17._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 1
 Dapeng Zhang, 2016

18._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 7
 Dapeng Zhang, 2016

19._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 4
 Dapeng Zhang, 2016

20._U_12_[PER]

identical
39 shared markers

Universidad Nacional Agraria de la Selva (UNAS), Peru
 Dapeng Zhang, 2016

21._U_12_[PER]

61.3 %
40 shared markers

 Dapeng Zhang, 2016

22._U_12_[PER] GC-02-4-1-4

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._U_12_[PER] U_12_Fld#_179_Plt#_5

36.3 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 179, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240