SNP Profiles of UCAYALI-12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCCCAAAATTTTCCTTAGTTTTTTTT
1._GC-08-185-4-28
CCCCCCAAAATTTTCCTTAGTTTTTTTT
2._GC-08-185-4-28
CCCCCCAAAATTTTCCTTAGTTTTTTTT
3._GC-08-185-4-28
CCCCCCAAAATTTTCCTTAGTTTTTTTT
4._GC-08-185-4-28
CCCCCCAAAATTTTCCTTAGTTTTTTTT
5._GC-08-184-4-27
CCCCCCAAAATTTTCCTTAGTTTTTTTT
6._GC-08-184-4-27
CCCCCCAAAATTTTCCTTAGTTTTTTTT
7._GC-08-184-4-27
CCCCCCAAAATTTTCCTTAGTTTTTTTT
8._GC-08-184-4-27
CCCCCCAAAATTTTCCTTAGTTTTTTTT
9._GC-08-184-4-27
CCCCCCAAAATTTTCCTTAGTTTTTTTT
10._U_12_[PER]
CCCCCC________CCTTAG__TT____
11._U_12_[PER]
CCCCCC________CCTTAG__TT____
12._U_12_[PER]
CCCCCC________CCTTAG__TT____
13._U_12_[PER]
CCCCCC________CCTTAG__TT____
14._U_12_[PER]
CCCCCC________CCTTAG__TT____
15._U_12_[PER]
CCCCCC________CCTTAG__TT____
16._U_12_[PER]
CCCCCC________CCTTAG__TT____
17._U_12_[PER]
CCCCCC________CCTTAG__TT____
18._U_12_[PER]
CCCCCC________CCTTAG__TT____
19._U_12_[PER]
CCCCCC________CCTTAG__TT____
20._U_12_[PER]
CCCCCC________CCTTAG__TT____
21._U_12_[PER]
CCCTAC________CTCTAA__CT____
22._GC-02-4-1-4
CC__CCAAAA__AAGG__AGAAAAAAAA
23._U_12_Fld#_179_Plt#_5
CC__ACAGAG__AGAG__AAAAAGAAAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCCCCCCCCAACCGGAAAAGGCC
1._GC-08-185-4-28
CCAAGGCCCCCCCCAACCGGAAAAGGCC
2._GC-08-185-4-28
CCAAGGCCCCCCCCAACCGGAAAAGGCC
3._GC-08-185-4-28
CCAAGGCCCCCCCCAACCGGAAAAGGCC
4._GC-08-185-4-28
CCAAGGCCCCCCCCAACCGGAAAAGGCC
5._GC-08-184-4-27
CCAAGGCCCCCCCCAACCGGAAAAGGCC
6._GC-08-184-4-27
CCAAGGCCCCCCCCAACCGGAAAAGGCC
7._GC-08-184-4-27
CCAAGGCCCCCCCCAACCGGAAAAGGCC
8._GC-08-184-4-27
CCAAGGCCCCCCCCAACCGGAAAAGGCC
9._GC-08-184-4-27
CCAAGGCCCCCCCCAACCGGAAAAGGCC
10._U_12_[PER]
____GG____CC________AAAA__CC
11._U_12_[PER]
____GG____CC________AAAA__CC
12._U_12_[PER]
____GG____CC________AAAA__CC
13._U_12_[PER]
____GG____CC________AAAA__CC
14._U_12_[PER]
____GG____CC________AAAA__CC
15._U_12_[PER]
____GG____CC________AAAA__CC
16._U_12_[PER]
____GG____CC________AAAA__CC
17._U_12_[PER]
____GG____CC________AAAA__CC
18._U_12_[PER]
____GG____CC________AAAA__CC
19._U_12_[PER]
____GG____CC________AAAA__CC
20._U_12_[PER]
____GG____CC________AAAA__CC
21._U_12_[PER]
____GG____CG________ATAT__CG
22._GC-02-4-1-4
CCAAGGGG__CCGGAAGGGGAAAACCGG
23._U_12_Fld#_179_Plt#_5
AAAGGGCG__CGGGAAAAGGATATGGCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
1._GC-08-185-4-28
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
2._GC-08-185-4-28
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
3._GC-08-185-4-28
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
4._GC-08-185-4-28
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
5._GC-08-184-4-27
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
6._GC-08-184-4-27
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
7._GC-08-184-4-27
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
8._GC-08-184-4-27
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
9._GC-08-184-4-27
TTTTTTGGCGCCAAGGTTTTGGCCGGCC
10._U_12_[PER]
TT______CG__AAGG____GG______
11._U_12_[PER]
TT______CG__AAGG____GG______
12._U_12_[PER]
TT______CG__AAGG____GG______
13._U_12_[PER]
TT______CG__AAGG____GG______
14._U_12_[PER]
TT______CG__AAGG____GG______
15._U_12_[PER]
TT______CG__AAGG____GG______
16._U_12_[PER]
TT______CG__AAGG____GG______
17._U_12_[PER]
TT______CG__AAGG____GG______
18._U_12_[PER]
TT______CG__AAGG____GG______
19._U_12_[PER]
TT______CG__AAGG____GG______
20._U_12_[PER]
TT______CG__AAGG____GG______
21._U_12_[PER]
AT______GG__AGGT____AG______
22._GC-02-4-1-4
TTAAAAGGCGCCAACCAAAAGGGGGGGG
23._U_12_Fld#_179_Plt#_5
ATAAACGGGGACAGACACAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCCCGGAGGGTTCCTT
1._GC-08-185-4-28
GGTTTTGGAAAACCCCGGAGGGTTCCTT
2._GC-08-185-4-28
GGTTTTGGAAAACCCCGGAGGGTTCCTT
3._GC-08-185-4-28
GGTTTTGGAAAACCCCGGAGGGTTCCTT
4._GC-08-185-4-28
GGTTTTGGAAAACCCCGGAGGGTTCCTT
5._GC-08-184-4-27
GGTTTTGGAAAACCCCGGAGGGTTCCTT
6._GC-08-184-4-27
GGTTTTGGAAAACCCCGGAGGGTTCCTT
7._GC-08-184-4-27
GGTTTTGGAAAACCCCGGAGGGTTCCTT
8._GC-08-184-4-27
GGTTTTGGAAAACCCCGGAGGGTTCCTT
9._GC-08-184-4-27
GGTTTTGGAAAACCCCGGAGGGTTCCTT
10._U_12_[PER]
____TT________________TTCC__
11._U_12_[PER]
____TT________________TTCC__
12._U_12_[PER]
____TT________________TTCC__
13._U_12_[PER]
____TT________________TTCC__
14._U_12_[PER]
____TT________________TTCC__
15._U_12_[PER]
____TT________________TTCC__
16._U_12_[PER]
____TT________________TTCC__
17._U_12_[PER]
____TT________________TTCC__
18._U_12_[PER]
____TT________________TTCC__
19._U_12_[PER]
____TT________________TTCC__
20._U_12_[PER]
____TT________________TTCC__
21._U_12_[PER]
____CT________________CTCC__
22._GC-02-4-1-4
CC__AA__AAAAGG__GGAGCCAAGGAA
23._U_12_Fld#_179_Plt#_5
CC__AG__AAAAGG__AGAAACAGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCTTCCGGGGACAAGGGGAACCCC
1._GC-08-185-4-28
GGCCCCTTCCGGGGACAAGGGGAACCCC
2._GC-08-185-4-28
GGCCCCTTCCGGGGACAAGGGGAACCCC
3._GC-08-185-4-28
GGCCCCTTCCGGGGACAAGGGGAACCCC
4._GC-08-185-4-28
GGCCCCTTCCGGGGACAAGGGGAACCCC
5._GC-08-184-4-27
GGCCCCTTCCGGGGACAAGGGGAACCCC
6._GC-08-184-4-27
GGCCCCTTCCGGGGACAAGGGGAACCCC
7._GC-08-184-4-27
GGCCCCTTCCGGGGACAAGGGGAACCCC
8._GC-08-184-4-27
GGCCCCTTCCGGGGACAAGGGGAACCCC
9._GC-08-184-4-27
GGCCCCTTCCGGGGACAAGGGGAACCCC
10._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
11._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
12._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
13._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
14._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
15._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
16._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
17._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
18._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
19._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
20._U_12_[PER]
__CC__TTCCGG__ACAAGGGG______
21._U_12_[PER]
__CC__TTCCCG__CCAGGTGT______
22._GC-02-4-1-4
GGGGGGAACCGGGGACAACCCCAA____
23._U_12_Fld#_179_Plt#_5
GGGGGGAACCCGGGCCAGACACGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTCCGGCCCCAAACCCCCAACCTTCC
1._GC-08-185-4-28
AACTCCGGCCCCAAACCCCCAACCTTCC
2._GC-08-185-4-28
AACTCCGGCCCCAAACCCCCAACCTTCC
3._GC-08-185-4-28
AACTCCGGCCCCAAACCCCCAACCTTCC
4._GC-08-185-4-28
AACTCCGGCCCCAAACCCCCAACCTTCC
5._GC-08-184-4-27
AACTCCGGCCCCAAACCCCCAACCTTCC
6._GC-08-184-4-27
AACTCCGGCCCCAAACCCCCAACCTTCC
7._GC-08-184-4-27
AACTCCGGCCCCAAACCCCCAACCTTCC
8._GC-08-184-4-27
AACTCCGGCCCCAAACCCCCAACCTTCC
9._GC-08-184-4-27
AACTCCGGCCCC__ACCCCCAACCTTCC
10._U_12_[PER]
AACT__________ACCC______TTCC
11._U_12_[PER]
AACT__________ACCC______TTCC
12._U_12_[PER]
AACT__________ACCC______TTCC
13._U_12_[PER]
AACT__________ACCC______TTCC
14._U_12_[PER]
AACT__________ACCC______TTCC
15._U_12_[PER]
AACT__________ACCC______TTCC
16._U_12_[PER]
AACT__________ACCC______TTCC
17._U_12_[PER]
AACT__________ACCC______TTCC
18._U_12_[PER]
AACT__________ACCC______TTCC
19._U_12_[PER]
AACT__________ACCC______TTCC
20._U_12_[PER]
AACT__________ACCC______TTCC
21._U_12_[PER]
AACC__________ACCG______CTCT
22._GC-02-4-1-4
__AGCCGGCCCC__ACGGGGAACCAAGG
23._U_12_Fld#_179_Plt#_5
__GGACAGACCC__ACCGGGATCCAGAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
1._GC-08-185-4-28
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
2._GC-08-185-4-28
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
3._GC-08-185-4-28
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
4._GC-08-185-4-28
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
5._GC-08-184-4-27
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
6._GC-08-184-4-27
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
7._GC-08-184-4-27
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
8._GC-08-184-4-27
CCCCGGCCCTTTCCTTGGX_XX_XX_XX_XX_X
9._GC-08-184-4-27
CCCCGGCCCT__CCTTGGX_XX_XX_XX_XX_X
10._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
11._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
12._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
13._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
14._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
15._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
16._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
17._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
18._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
19._U_12_[PER]
CC__GG__CTTTCC____X_XX_XX_XX_XX_X
20._U_12_[PER]
CC__GG__CT__CC____X_XX_XX_XX_XX_X
21._U_12_[PER]
CC__AG__TTGTCT____X_XX_XX_XX_XX_X
22._GC-02-4-1-4
__GG____AGAAGGAAGGX_XX_XX_XX_XX_X
23._U_12_Fld#_179_Plt#_5
__AG____AGACAGAAGGX_XX_XX_XX_XX_X

Input profile: U_12_[PER] GC-08-185-4-28

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._U_12_[PER] GC-08-185-4-28

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._U_12_[PER] GC-08-185-4-28

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._U_12_[PER] GC-08-185-4-28

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._U_12_[PER] GC-08-185-4-28

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._U_12_[PER] GC-08-184-4-27

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._U_12_[PER] GC-08-184-4-27

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._U_12_[PER] GC-08-184-4-27

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._U_12_[PER] GC-08-184-4-27

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._U_12_[PER] GC-08-184-4-27

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 5
 Dapeng Zhang, 2016

11._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 7
 Dapeng Zhang, 2016

12._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 4
 Dapeng Zhang, 2016

13._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 3
 Dapeng Zhang, 2016

14._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 2
 Dapeng Zhang, 2016

15._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 7
 Dapeng Zhang, 2016

16._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 5
 Dapeng Zhang, 2016

17._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 2
 Dapeng Zhang, 2016

18._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 1
 Dapeng Zhang, 2016

19._U_12_[PER]

identical
39 shared markers

Universidad Nacional Agraria de la Selva (UNAS), Peru
 Dapeng Zhang, 2016

20._U_12_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 4
 Dapeng Zhang, 2016

21._U_12_[PER]

61.5 %
39 shared markers

 Dapeng Zhang, 2016

22._U_12_[PER] GC-02-4-1-4

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._U_12_[PER] U_12_Fld#_179_Plt#_5

36.1 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 179, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1350 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240