SNP Profiles of CATONGO-01   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCC
1._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
2._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
3._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
4._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
5._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
6._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
7._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
13._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
14._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
15._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
16._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
17._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
18._GC-08-109-3-8
AAAA__AAGGGG__GGGG__GGAAGGGG
19._GC-08-277-8-49
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCCTTAATTGGTTAACCGG
1._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
2._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
3._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
4._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
5._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
6._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
7._GC-08-278-8-50
AACCAAGGCCCCTTAATT__TTAACCGG
8._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
9._GC-08-277-8-49
AACCAA__CCCCTTAATTGGTTAACCGG
10._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
11._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
12._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
13._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
14._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
15._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
16._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
17._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
18._GC-08-109-3-8
TTCCAACC__CCAAGGAAGGTTAAGGCC
19._GC-08-277-8-49
TTCCAACC__CCAGGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAACCCCGGTTGGTTGGTTAACCGG
1._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
2._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
3._GC-08-109-3-08
TTGGAACCCCGGTTGGTTGGTTAACCGG
4._GC-08-109-3-08
TTGGAACCCCGGTTGGTTGGTTAACCGG
5._GC-08-109-3-08
TTGGAACCCCGGTTGGTTGGTTAACCGG
6._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
7._GC-08-278-8-50
TTGGAACCCCGGTTGGTTGGTTAACCGG
8._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
9._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
10._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
11._GC-08-277-8-49
TTTTAACCCCGGTTGGTTGGTTAACCGG
12._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
13._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
14._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
15._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
16._GC-08-277-8-49
TTTTAACCCCGGTTGGTTGGTTAACCGG
17._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
18._GC-08-109-3-8
AACCAACCCCGGAA__AAGGAAAAGGCC
19._GC-08-277-8-49
AAAAAACCCCGGAA__AAGGAAAAGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
2._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
3._GC-08-109-3-08
TTCCAAGGAACCCCGGGGTTTTCCTTTT
4._GC-08-109-3-08
TTCCAAGGAACCCCGGGGTTTTCCTTTT
5._GC-08-109-3-08
TTCCAAGGAACCCCGGGGTTTTCCTTTT
6._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
7._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
8._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
9._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
10._GC-08-277-8-49
TTCCAAGGAACCCC__GGTTTTCCTTTT
11._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
12._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
13._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
14._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
15._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
16._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
17._GC-08-278-8-50
TTCCAAGGAACCCCGGGG__TTCCTTTT
18._GC-08-109-3-8
__GG__GGAAGG__GGGGAAAAGGAAAA
19._GC-08-277-8-49
__GG__GGAAGG__GGGGAAAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AACCTTCCAAGGGGAAAATTGGGGTTCC
1._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
2._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
3._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
4._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
5._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
6._GC-08-277-8-49
__CCTTCCAAGGGGAAAATTGGGGTTCC
7._GC-08-278-8-50
AACCTTCCAAGGGGAAAATTGGGGTTCC
8._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
9._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
10._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
11._GC-08-277-8-49
AACCTTTTAAGGGGACAATTGGGGTTCC
12._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
13._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
14._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
15._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
16._GC-08-277-8-49
AACCTTTTAAGGGGACAATTGGGGTTCC
17._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
18._GC-08-109-3-8
AAGGAAGGAAGGGGAAAAAACCGG____
19._GC-08-277-8-49
AAGGAAAAAAGGGGACAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTAAAACCAAAACCGGCCTTAATTTT
1._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
2._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
3._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
4._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
5._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
6._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
7._GC-08-278-8-50
GGTTAAAACCAAAA__GGCCTTAATTTT
8._GC-08-277-8-49
GGTTAAAACCAAAA__GGCCTTAATTTT
9._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
10._GC-08-277-8-49
GG__AAAACCAAAACCGGCCTTAATTTT
11._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
12._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
13._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
14._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
15._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
16._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
17._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
18._GC-08-109-3-8
__AAAAAACCAA__CCCCGGTTAAAAAA
19._GC-08-277-8-49
__AAAAAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-278-8-50
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-277-8-49
TTCCAATTCC__TTAAGGX_XX_XX_XX_XX_X
9._GC-08-277-8-49
TTCCAATTCC__TTAAGGX_XX_XX_XX_XX_X
10._GC-08-277-8-49
TTCCAATTCC__TTAAGGX_XX_XX_XX_XX_X
11._GC-08-277-8-49
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
16._GC-08-277-8-49
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
17._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-08-109-3-8
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
19._GC-08-277-8-49
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-277-8-49

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

3._CATONGO_1 GC-08-109-3-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CATONGO_1 GC-08-109-3-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._CATONGO_1 GC-08-109-3-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._CATONGO_1 GC-08-277-8-49

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._CATONGO_1 GC-08-278-8-50

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

17._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._CATONGO_1 GC-08-109-3-8

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-277-8-49

46.8 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240